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Publication search results
found 567 matches
- 2023
- Marwan Abdellah
, Juan Jose Garcia-Cantero, Nadir Román Guerrero, Alessandro Foni, Jay S. Coggan, Corrado Calì
, Marco Agus, Eleftherios Zisis
, Daniel X. Keller
, Markus Hadwiger
, Pierre J. Magistretti
, Henry Markram, Felix Schürmann:
Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience. Briefings Bioinform. 24(1) (2023) - Ko Abe
, Teppei Shimamura:
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data. Briefings Bioinform. 24(5) (2023) - Alison K. Adams
, Brandon D. Kristy
, Myranda Gorman
, Peter Balint-Kurti
, G. Craig Yencho
, Bode A. Olukolu
:
Qmatey: an automated pipeline for fast exact matching-based alignment and strain-level taxonomic binning and profiling of metagenomes. Briefings Bioinform. 24(6) (2023) - Khandakar Tanvir Ahmed, Sze Cheng, Qian Li
, Jeongsik Yong
, Wei Zhang
:
Incomplete time-series gene expression in integrative study for islet autoimmunity prediction. Briefings Bioinform. 24(1) (2023) - Shehab Sarar Ahmed
, Zaara Tasnim Rifat, M. Saifur Rahman, M. Sohel Rahman:
Succinylated lysine residue prediction revisited. Briefings Bioinform. 24(1) (2023) - Dongmei Ai, Lulu Chen, Jiemin Xie, Longwei Cheng, Fang Zhang, Yihui Luan, Yang Li, Shengwei Hou
, Fengzhu Sun, Li Charlie Xia
:
Identifying local associations in biological time series: algorithms, statistical significance, and applications. Briefings Bioinform. 24(6) (2023) - Mohammad Rizwan Alam, Kyung Jin Seo
, Jamshid Abdul-Ghafar, Kwangil Yim, Sung Hak Lee, Hyun-Jong Jang, Chan Kwon Jung, Yosep Chong:
Recent application of artificial intelligence on histopathologic image-based prediction of gene mutation in solid cancers. Briefings Bioinform. 24(3) (2023) - María Isabel Alcoriza-Balaguer, Juan Carlos García-Cañaveras
, Marta Benet, Oscar Juan-Vidal
, Agustín Lahoz
:
FAMetA: a mass isotopologue-based tool for the comprehensive analysis of fatty acid metabolism. Briefings Bioinform. 24(2) (2023) - Muhammad Nabeel Asim
, Muhammad Ali Ibrahim, Ahtisham Fazeel
, Andreas Dengel, Sheraz Ahmed:
DNA-MP: a generalized DNA modifications predictor for multiple species based on powerful sequence encoding method. Briefings Bioinform. 24(1) (2023) - Tasbiraha Athaya, Rony Chowdhury Ripan, Xiaoman Li
, Haiyan Hu
:
Multimodal deep learning approaches for single-cell multi-omics data integration. Briefings Bioinform. 24(5) (2023) - Tao Bai, Ke Yan
, Bin Liu:
DAmiRLocGNet: miRNA subcellular localization prediction by combining miRNA-disease associations and graph convolutional networks. Briefings Bioinform. 24(4) (2023) - Nisha Bajiya
, Anjali Dhall
, Suchet Aggarwal
, Gajendra P. S. Raghava
:
Advances in the field of phage-based therapy with special emphasis on computational resources. Briefings Bioinform. 24(1) (2023) - Ina Bang
, Sang-Mok Lee
, Seojoung Park, Joon Young Park
, Linh Khanh Nong, Ye Gao
, Bernhard O. Palsson, Donghyuk Kim:
Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling. Briefings Bioinform. 24(2) (2023) - Jingxuan Bao
, Changgee Chang
, Qiyiwen Zhang, Andrew J. Saykin, Li Shen
, Qi Long:
Integrative analysis of multi-omics and imaging data with incorporation of biological information via structural Bayesian factor analysis. Briefings Bioinform. 24(2) (2023) - Denis Beslic
, Georg Tscheuschner
, Bernhard Y. Renard
, Michael G. Weller
, Thilo Muth
:
Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly. Briefings Bioinform. 24(1) (2023) - Brandt Bessell, Josh Loecker, Zhongyuan Zhao, Sara Sadat Aghamiri, Sabyasachi Mohanty
, Rada Amin, Tomás Helikar
, Bhanwar Lal Puniya
:
COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery. Briefings Bioinform. 24(6) (2023) - Vandana Bharti, Shabari S. Nair, Akshat Jain, Kaushal Kumar Shukla, Bhaskar Biswas:
Concept drift detection in toxicology datasets using discriminative subgraph-based drift detector. Briefings Bioinform. 24(1) (2023) - Jilong Bian, Xi Zhang, Xiying Zhang, Dali Xu, Guohua Wang
:
MCANet: shared-weight-based MultiheadCrossAttention network for drug-target interaction prediction. Briefings Bioinform. 24(2) (2023) - Martin Bishop:
Editorial. Briefings Bioinform. 24(3) (2023) - Prem Singh Bist
, Hilal Tayara
, Kil To Chong
:
Sars-escape network for escape prediction of SARS-COV-2. Briefings Bioinform. 24(3) (2023) - Quentin Blampey
, Nadège Bercovici
, Charles-Antoine Dutertre
, Isabelle Pic, Joana Mourato Ribeiro
, Fabrice André
, Paul-Henry Cournède
:
A biology-driven deep generative model for cell-type annotation in cytometry. Briefings Bioinform. 24(5) (2023) - Simon Boutry
, Raphaël Helaers
, Tom Lenaerts
, Miikka Vikkula
:
Rare variant association on unrelated individuals in case-control studies using aggregation tests: existing methods and current limitations. Briefings Bioinform. 24(6) (2023) - Rahul Brahma
, Jae-Min Shin, Kwang-Hwi Cho:
KinScan: AI-based rapid profiling of activity across the kinome. Briefings Bioinform. 24(6) (2023) - Sugam Budhraja
, Maryam Doborjeh, Balkaran Singh, Samuel Tan, Zohreh Gholami Doborjeh
, Edmund M.-K. Lai
, Alexander Merkin, Jimmy Lee
, Wilson Wen Bin Goh
, Nikola K. Kasabov
:
Filter and Wrapper Stacking Ensemble (FWSE): a robust approach for reliable biomarker discovery in high-dimensional omics data. Briefings Bioinform. 24(6) (2023) - Alessia Buratin, Stefania Bortoluzzi
, Enrico Gaffo
:
Systematic benchmarking of statistical methods to assess differential expression of circular RNAs. Briefings Bioinform. 24(1) (2023) - Guoxing Cai
, Wenyi Zhao, Zhan Zhou
, Xun Gu:
MATTE: a pipeline of transcriptome module alignment for anti-noise phenotype-gene-related analysis. Briefings Bioinform. 24(4) (2023) - Qiushi Cao
, Cheng Ge
, Xuejie Wang, Peta J. Harvey, Zixuan Zhang, Yuan Ma, Xianghong Wang, Xinying Jia, Mehdi Mobli, David J. Craik, Tao Jiang, Jinbo Yang, Zhiqiang Wei, Yan Wang, Shan Chang
, Rilei Yu:
Designing antimicrobial peptides using deep learning and molecular dynamic simulations. Briefings Bioinform. 24(2) (2023) - Yue Cao
, Shila Ghazanfar
, Pengyi Yang, Jean Y. H. Yang
:
Benchmarking of analytical combinations for COVID-19 outcome prediction using single-cell RNA sequencing data. Briefings Bioinform. 24(3) (2023) - Ruifen Cao, Weiling Hu, Pi-Jing Wei, Yun Ding, Yannan Bin
, Chun-Hou Zheng:
FFMAVP: a new classifier based on feature fusion and multitask learning for identifying antiviral peptides and their subclasses. Briefings Bioinform. 24(6) (2023) - Yang Cao
, Dan Wang, Jin Wu, Zhanxin Yao, Si Shen, Chao Niu, Ying Liu, Pengcheng Zhang, Quannian Wang, Jinhao Wang, Hua Li, Xi Wei, Xinxing Wang, Qingyang Dong:
MSI-XGNN: an explainable GNN computational framework integrating transcription- and methylation-level biomarkers for microsatellite instability detection. Briefings Bioinform. 24(6) (2023)
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