Stars
Dead simple CSRF security middleware for Starlette ⭐ and FastAPI ⚡
Typed interactions with the GitHub API v3
https://taxonomicallyinformedannotation.github.io/tima
Template to set up a modern Python project
Monorepo for the Earth Metabolome Initiative
Python client for searching, publishing and modifying nanopublications.
Java library for nanopublications based on RDF4J
Scalable and self-optimizing processing workflow for untargeted LC-MS
Template repository for setting a reproducible research project.
Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.
A wrapper of rclone for each folder. Essentially minimize syncing workload for the person. After setting it up, syncing become just `./sync-with-rclone.sh push` or `pull`.
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
This repository contains a copy of the Snakemake pipeline used for the creation of the four linear Lactuca pangenomes.
MMseqs2: ultra fast and sensitive search and clustering suite
CLOCI (Co-occurrence Locus and Orthologous Cluster Identifier) identifies gene clusters using multiple proxies of selection for coordinated gene evolution. In the process, CLOCI circumscribes loci …
Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparative genomics.
Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis
Foster the development of impactful AI models in drug discovery.