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    91 repositories

    • epiphyte

      Public
      Python toolkit for working with high-dimensional neural data recorded during naturalistic, continuous stimuli @a-darcher @rachrapp
      pythondockermoviesdatabasetoolboxdata-analysisdata-pipelinesdatajointmeta-dataepiphyte
      Python
      •
      GNU General Public License v3.0
      •1•9•0•0•Updated Oct 1, 2025Oct 1, 2025

    • velocity-hypothesis-test

      Public
      Standalone implementation of hypothesis test for velocity visualisations by Sebastian @Baschdl
      Jupyter Notebook
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • fnope

      Public
      Code for "FNOPE: Simulation-based inference on function spaces with Fourier Neural Operators"
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • automind

      Public
      Automated Model Inference from Neural Dynamics
      Jupyter Notebook
      •
      Apache License 2.0
      •6•16•0•1•Updated Sep 10, 2025Sep 10, 2025

    • sbi-icann

      Public
      Interactive SBI tutorial at ICANN, by @michaeldeistler
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 9, 2025Sep 9, 2025

    • PRIME

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Sep 1, 2025Sep 1, 2025

    • jaxley_experiments

      Public
      Repository to reproduce results of `Differentiable simulation enables large-scale training of biophysical models of neural dynamics`.
      Jupyter Notebook
      •
      MIT License
      •1•3•1•0•Updated Aug 28, 2025Aug 28, 2025

    • EDAPT

      Public
      EDAPT: Towards Calibration-Free BCIs with Continual Online Adaptation
      Jupyter Notebook
      •0•0•0•0•Updated Aug 15, 2025Aug 15, 2025

    • npe-pf

      Public
      Minimal repository for the preprint "Effortless, Simulation-Efficient Bayesian Inference using Tabular Foundation Models"
      Python
      •
      Other
      •0•3•0•0•Updated Jul 21, 2025Jul 21, 2025

    • sequence-memory

      Public
      Code for Liebe et al. "Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks", code by Matthijs Pals (@Matthijspals)
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Jul 2, 2025Jul 2, 2025

    • simformer

      Public
      Combination of transformers and diffusion models for flexible all-in-one simulation-based inference
      Jupyter Notebook
      •
      MIT License
      •12•71•4•0•Updated Jun 20, 2025Jun 20, 2025

    • preprocessing-ice-data

      Public
      Simulation-Based Inference of Surface Accumulation and Basal Melt Rates of an Antarctic Ice Shelf from Isochronal Layers
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

    • sbi-ice

      Public
      Simulation-Based Inference of Surface Accumulation and Basal Melt Rates of an Antarctic Ice Shelf from Isochronal Layers
      Python
      •
      GNU Affero General Public License v3.0
      •0•2•3•0•Updated Jun 20, 2025Jun 20, 2025

    • figure_tutorial

      Public
      Tutorial for making figures, written by Michael @michaeldeistler
      Jupyter Notebook
      •
      MIT License
      •1•11•0•0•Updated May 15, 2025May 15, 2025

    • pyloric

      Public
      Simulator of the pyloric network in cython.
      pythonsimulatorstomatogastric-ganglioncythonpyloric-network
      Jupyter Notebook
      •
      MIT License
      •0•3•3•0•Updated May 8, 2025May 8, 2025

    • neural_timeseries_diffusion

      Public
      This repository contains research code for the paper "Generating realistic neurophysiological time series with denoising diffusion probabilistic models". @jsvetter
      Python
      •
      MIT License
      •9•81•1•0•Updated May 2, 2025May 2, 2025

    • mls_seminar_ball_throw_example

      Public
      Python
      •0•0•0•0•Updated May 2, 2025May 2, 2025

    • smc_rnns

      Public
      Code accompanying Inferring stochastic low-rank RNNs from neural data. @Matthijspals
      Jupyter Notebook
      •
      Apache License 2.0
      •5•24•0•0•Updated Apr 17, 2025Apr 17, 2025

    • neuralgbi_diffusion

      Public
      Richard @rdgao & Michael @michaeldeistler: using neural network-based regression and density estimation for Generalized Bayesian Inference
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Apr 14, 2025Apr 14, 2025

    • simulation_based_model_inference

      Public
      Repository for the paper "Simultaneous identification of models and parameters of scientific simulators" -- Cornelius: @coschroeder
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

    • markovsbi

      Public
      Public repository for paper: Compositional simulation-based inference for time series.
      Jupyter Notebook
      •0•5•0•0•Updated Feb 28, 2025Feb 28, 2025

    • neuro-behavior-conditioning

      Public
      Masked variational autoencoders for modeling conditional distributions of neural and behavioral data
      Jupyter Notebook
      •
      MIT License
      •0•10•0•0•Updated Feb 24, 2025Feb 24, 2025

    • sourcerer-sequential

      Public
      A sequential variant of the "Sourcerer: Sample-based Maximum Entropy Source Distribution Estimation" algorithm @swag2198
      Jupyter Notebook
      •
      MIT License
      •4•1•0•0•Updated Feb 17, 2025Feb 17, 2025

    • sourcerer

      Public
      Code for "Sourcerer: Sample-based Maximum Entropy Source Distribution Estimation"
      Python
      •
      MIT License
      •4•4•0•0•Updated Dec 22, 2024Dec 22, 2024

    • neonatal_apnea_prediction

      Public
      Neonatal apnea and hypopnea prediction in infants with Robin sequence with neural additive models for time series. @jsvetter
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 22, 2024Dec 22, 2024

    • data_literacy_notebooks

      Public
      Jupyter notebooks for the Data Literacy Lecture 2024/2025
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Dec 19, 2024Dec 19, 2024

    • LDNS

      Public
      Jupyter Notebook
      •
      MIT License
      •3•22•0•0•Updated Dec 11, 2024Dec 11, 2024

    • sequence_memory_NN

      Public
      Main Figure code and data accompanying paper
      MATLAB
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • .github

      Public
      Repo for mackelab github landing page, maintained by @michaeldeistler
      0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • sbi-ves

      Public
      Simulation-Based Inference of Soil Resistivitiy from Vertical Electrical Sounding combined with a Web Application for web-based inversion
      Jupyter Notebook
      •1•0•0•0•Updated Aug 6, 2024Aug 6, 2024