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    61 repositories

    • stan-client

      Public
      Front-end code for the Spatial Genomics LIMS
      TypeScript
      •
      MIT License
      •0•1•16•8•Updated Oct 10, 2025Oct 10, 2025

    • sequencescape

      Public
      Web based LIMS
      rubyrailssciencebiologylims
      Ruby
      •
      MIT License
      •34•104•118•26•Updated Oct 10, 2025Oct 10, 2025

    • baracoda

      Public
      Generate barcodes on demand
      Python
      •
      MIT License
      •1•0•9•6•Updated Oct 10, 2025Oct 10, 2025

    • quanthub

      Public
      Provides parsing and visualisation of the concentration information from qPCR and plate readers
      JavaScript
      •
      MIT License
      •4•2•3•7•Updated Oct 10, 2025Oct 10, 2025

    • traction-ui

      Public
      JavaScript
      •
      MIT License
      •5•2•28•6•Updated Oct 10, 2025Oct 10, 2025

    • gatekeeper

      Public
      Gatekeeper is used to track the production and validation of batches of tag plates for sequencing. It is designed to interface with the Sequencescape LIMS.
      railsruby
      Ruby
      •
      MIT License
      •5•0•10•11•Updated Oct 9, 2025Oct 9, 2025

    • sm_workflow_lims

      Public
      A small LIMS to assist with managing workflows
      railsruby
      Ruby
      •
      MIT License
      •6•1•9•30•Updated Oct 9, 2025Oct 9, 2025

    • limber

      Public
      A config-driven LIMS built on Sequencescape, primarily for running library preparation pipelines in the laboratory
      railsvuelimssequencescape-client-application
      Ruby
      •
      MIT License
      •8•5•71•19•Updated Oct 9, 2025Oct 9, 2025

    • unified_warehouse

      Public
      ruby
      Ruby
      •
      MIT License
      •8•2•5•13•Updated Oct 9, 2025Oct 9, 2025

    • lab-share-lib

      Public
      Python library to interact with lab-share framework
      Python
      •
      MIT License
      •0•0•1•10•Updated Oct 9, 2025Oct 9, 2025

    • tol-lab-share

      Public
      Rabbitmq consumer for TOL data input
      Python
      •
      MIT License
      •0•0•2•10•Updated Oct 8, 2025Oct 8, 2025

    • lighthouse-ui-v3

      Public
      V3 front end for lighthouse API
      JavaScript
      •
      MIT License
      •0•0•2•15•Updated Oct 8, 2025Oct 8, 2025

    • crawler

      Public
      Store sample data from Lighthouse labs
      Python
      •
      MIT License
      •3•4•24•12•Updated Oct 8, 2025Oct 8, 2025

    • labwhere

      Public
      A tool for tracking uniquely barcoded labware
      Ruby
      •
      MIT License
      •10•3•9•6•Updated Oct 8, 2025Oct 8, 2025

    • print_my_barcode

      Public
      Barcode printing service
      HTML
      •5•2•2•2•Updated Oct 8, 2025Oct 8, 2025

    • event_warehouse

      Public
      A simple message queue driven event store
      rubyrails
      Ruby
      •
      MIT License
      •4•0•5•8•Updated Oct 8, 2025Oct 8, 2025

    • traction-service

      Public
      Ruby on Rails exposing a RESTful API for a Long Read LIMS
      Ruby
      •
      MIT License
      •5•5•8•2•Updated Oct 7, 2025Oct 7, 2025

    • asset_audits

      Public
      Add audits to assets in sequencescape
      railsruby
      JavaScript
      •
      MIT License
      •7•3•4•6•Updated Oct 7, 2025Oct 7, 2025

    • interrogator

      Public
      A custom interface to query Intergration Suite results via GitLab
      rubysinatra
      Ruby
      •
      MIT License
      •0•0•1•1•Updated Oct 7, 2025Oct 7, 2025

    • stan-core

      Public
      Java
      •
      MIT License
      •2•0•3•1•Updated Oct 7, 2025Oct 7, 2025

    • janitor

      Public
      A Python application which hosts task scripts for data management and clean up tasks, running them on a schedule.
      Python
      •
      MIT License
      •0•0•1•11•Updated Oct 2, 2025Oct 2, 2025

    • .github

      Public
      Default community health files for Sanger
      0•0•0•1•Updated Sep 29, 2025Sep 29, 2025

    • record_loader

      Public
      Easily manage seeding and updating data from simple yml files
      Ruby
      •
      Other
      •1•0•0•9•Updated Sep 24, 2025Sep 24, 2025

    • warren

      Public
      Gem to handle rabbitMQ integrations
      Ruby
      •
      Other
      •0•1•1•7•Updated Sep 24, 2025Sep 24, 2025

    • jsonapi-resources

      Public
      A resource-focused Rails library for developing JSON:API compliant servers.
      Ruby
      •
      MIT License
      •538•0•0•1•Updated Sep 22, 2025Sep 22, 2025

    • wrangler

      Public
      A microservice to deal with tube racks
      Python
      •
      MIT License
      •2•0•2•13•Updated Sep 22, 2025Sep 22, 2025

    • cherrytrack

      Public
      Python
      •
      GNU General Public License v2.0
      •0•0•6•11•Updated Sep 22, 2025Sep 22, 2025

    • lighthouse

      Public
      API to search through data provided by Lighthouse Labs
      Python
      •
      MIT License
      •1•2•18•11•Updated Sep 19, 2025Sep 19, 2025

    • sprint

      Public
      Simple print service
      CSS
      •
      MIT License
      •0•0•0•11•Updated Aug 21, 2025Aug 21, 2025

    • sample-tracking

      Public
      Sample Tracking Report
      Python
      •0•0•12•0•Updated Jul 30, 2025Jul 30, 2025