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Commits on Feb 28, 2018

• remove python 3 scripts

  

  Iain Mathieson

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Commits on Oct 17, 2017

• Remove debug code

  

  Iain Mathieson

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• remove debug statments

  

  Iain Mathieson

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• add maskfa. Fix issue with bytestring input

  

  Iain Mathieson

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Commits on Oct 10, 2017

• Merge branch 'master' of https://github.com/mathii/gdc

  

  Iain Mathieson

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• bo

  

  Iain Mathieson

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• unicode

  

  Iain Mathieson

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Commits on Oct 6, 2017

• GL declaration

  

  Iain Mathieson

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Commits on Oct 5, 2017

• fix_merge

  

  Iain Mathieson

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• deal with deletions

  

  Iain Mathieson

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• gteq

  

  Iain Mathieson

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• apulldown

  

  Iain Mathieson

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Commits on Oct 27, 2016

• fix masking code again

  

  Iain Mathieson

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• fix masking code

  

  Iain Mathieson

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• sigh

  

  Iain Mathieson

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Commits on Oct 26, 2016

• vcf2hetfa actually generates hetfa now

  

  Iain Mathieson

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Commits on Sep 6, 2016

• Merge branch 'master' of https://github.com/mathii/gdc

  

  Iain Mathieson

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• allow .ind file for population map

  

  Iain Mathieson

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Commits on Aug 22, 2016

• License

  

  Iain Mathieson

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• bugfix to polysites

  

  Iain Mathieson

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• add polysites2vcf

  

  Iain Mathieson

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Commits on Mar 3, 2016

• defaults ind/pop/snp shoudl be None

  

  Iain Mathieson

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Commits on Feb 25, 2016

• classic house (bug)

  

  Iain Mathieson

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Commits on Dec 2, 2015

• add pop and snp options to eigenstrat2vcf.py

  

  Iain Mathieson

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Commits on Dec 1, 2015

• select inds in eigenstrat2vcf

  

  Iain Mathieson

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• select inds in eigenstrat2vcf

  

  Iain Mathieson

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Commits on Jun 12, 2015

• hemizygous non-ref alleles should be coded as 2 in eigenstrat format

  

  Iain Mathieson

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Commits on Jun 10, 2015

• add eigenstrat2vcf.py

  

  Iain Mathieson

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• add eigenstrat2vcf.py

  

  Iain Mathieson

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Commits on Apr 15, 2015

• avoid div by 0

  

  Iain Mathieson

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• add vcf2freq

  

  Iain Mathieson

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Commits on Apr 6, 2015

• bug

  

  Iain Mathieson

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• can set inds as pops in vcf2eigenstrat

  

  Iain Mathieson

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Commits on Mar 31, 2015

• add vcf2hetfa, but only for haplotype files

  

  Iain Mathieson

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Commits on Mar 13, 2015

• bug

  

  Iain Mathieson

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