tools for working with genome variation graphs

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

Accelerated BLAST compatible local sequence aligner.

Implementation of the Jupyter kernel protocol in C++

gesture recognition toolkit

SPAdes Genome Assembler

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

The second version of the Kraken taxonomic sequence classification system

A completely emoji-based programming language

Versioned fork of the OpenCV gem for Ruby

Python and C++ code for reading and writing genomics data.

Breakout Detection via Robust E-Statistics

Oxford Nanopore's Basecaller

A fast and sensitive gapped read aligner

Read excel files (.xls and .xlsx) into R 🖇

Versatile open-source tool for microbiome analysis

A high-performance, Pythonic language for bioinformatics

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

A single molecule sequence assembler for genomes large and small.

Procedural Hydrology / River / Lake Simulation

Ultra-fast and memory-efficient (meta-)genome assembler

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

A pathtracer for R. Build and render complex scenes and 3D data visualizations directly from R

High Performance Minecraft Map Renderer.

hybrid assembly pipeline for bacterial genomes

Signal-level algorithms for MinION data

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.