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Commits on Oct 6, 2025

• API workers deadlock under heavy load using async VCF annotation (#260)

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  ehclark

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  1eaf3a7

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Commits on Sep 24, 2025

• tests: fix failing liftover tests (issue #242)

  jennifer-bowser

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  216655f

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Commits on Sep 12, 2025

• fix: remove `search_variations` and `get_variation_count` declarations from the `_Storage` class (#237)

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  jennifer-bowser

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  8d43dc5

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Commits on Sep 11, 2025

• refactor: improve Pylance compliance (issue #228)

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  jennifer-bowser

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  19a28bb

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• feat: handle cases where liftover is ambiguous (issue #198)

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  jennifer-bowser

  and

  jsstevenson

  authored
  f85e2c7

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• style: update ruff configs (#226)

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  jsstevenson

  authored
  23cb24d

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• feat: verify that liftover is reversible before linking a lifted-over variant back to the original variant (issue #195)

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  jennifer-bowser

  and

  jsstevenson

  authored
  274cabc

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• feat: add project requirements to the docs (issue #232)

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  jennifer-bowser

  authored
  2043be5

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Commits on Sep 4, 2025

• adds project requirements to the docs

  jennifer-bowser

  committed
  6d092b0

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Commits on Aug 26, 2025

• test: add test case for unconvertible grch38 variant (issue #196)

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  jennifer-bowser

  and

  jsstevenson

  authored
  83f9b0b

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Commits on Aug 25, 2025

• refactor: consolidate registration middleware (issue #189)

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  3 peopleauthored
  208e5b7

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Commits on Aug 8, 2025

• chore: update doc links in .env.example (#224)

  jsstevenson

  authored
  c1e2ccc

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• feat: return 501 if annotations are unsupported (#220)

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  jsstevenson

  authored
  cfb3c5e

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Commits on Aug 7, 2025

• feat: liftover variants on registration (issue #147)

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  jennifer-bowser

  and

  jsstevenson

  authored
  1cca024

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• fix: use correct vcf worker args (#217)

  jsstevenson

  authored
  3f24e42

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Commits on Aug 6, 2025

• chore: ignore env management lockfiles (#214)

  jsstevenson

  authored
  3971b34

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• docs: make some docs (#209)

  jsstevenson

  authored
  36d4172

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Commits on Aug 1, 2025

• fix(docs): use correct link for forks (#210)

  korikuzma

  authored
  ca021a4

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Commits on Jul 17, 2025

• feat: enable optional vrs attrs annotation (#194)

  jsstevenson

  authored
  46fe5ab

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Commits on Jul 16, 2025

• feat!: add `PUT /annotated_vcf` (#192)

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  jsstevenson

  authored
  bf9313a

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Commits on Jul 14, 2025

• feat: add /service-info endpoint (#180)

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  jsstevenson

  authored
  8f6baa0

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Commits on Jul 10, 2025

• fix: remove redundant logging (#187)

  jsstevenson

  authored
  0c82b3a

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Commits on Jun 30, 2025

• fix: ensure dotenv is available for celery worker (#185)

  jsstevenson

  authored
  0374544

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Commits on Jun 27, 2025

• feat: resolve warnings, annotate routes with response model (#181)

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  jsstevenson

  authored
  e35869c

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Commits on Jun 24, 2025

• feat: set environment variables via a `.env` file (issue 158)

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  jennifer-bowser

  authored
  1d28b56

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• feat: configure logging + provide exceptions in logs for API service (#178)

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  jsstevenson

  authored
  317cd0c

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• cicd: update precommit, add hooks and action (#176)

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  jsstevenson

  and

  github-advanced-security[bot]

  authored
  89d5315

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• fix: don't use deprecated pkg_resources for __version__ (#174)

  jsstevenson

  authored
  edb04b4

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Commits on Jun 23, 2025

• docs: update the example request body for the '/variation' endpoint (issue #171)

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  jennifer-bowser

  authored
  1f5c795

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Commits on Jun 12, 2025

• fix: update demo notebook to align with updated codebase functions (#164)

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  Krt-11

  and

  jennifer-bowser

  authored
  964e7c2

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Commits on Jun 9, 2025

• docs: update docs with setup instructions for Anyvar dependencies and specialized operations (issue #137)

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  3 peopleauthored
  ab9f5f6

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• refactor: update python version from 3.10 to 3.11 (#168)

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  Krt-11

  authored
  5b21d74

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• chore: remove stale files (#167)

  Krt-11

  authored
  05ffeb5

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Commits on Jun 2, 2025

• docs: update docs with clearer testing procedures

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  3 peopleauthored
  aa13a4a

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• fix: add input VCF file for demo notebook

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  jennifer-bowser

  authored
  c9578ab

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