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Pull requests list

Fix broken link
#3821 by duerrsimon was merged Jan 6, 2022 Loading…
2 tasks done
2
Allow mmCIF parser to read auth_* records for residue numbers and chain IDs. Enhancement
#3820 by sjdv1982 was merged Feb 3, 2022 Loading…
1
@JoaoRodrigues
12
Adds pepdigest parser
#3818 by Caiofcas was closed May 1, 2023 Loading…
3 tasks done
1
11
Deprecating Bio.pairwise2
#3817 by mdehoon was merged Dec 3, 2021 Loading…
3 tasks done
2
AtomKey int test with Integral to fix loading mmtf file
#3816 by rob-miller was closed Mar 21, 2022 Loading…
3 tasks done
1
@JoaoRodrigues
3
add sphinx directives to .flake8 file
#3814 by rob-miller was merged Nov 30, 2021 Loading…
3 tasks done
1
1
Remove Python 2 era example
#3811 by peterjc was merged Feb 27, 2022 Loading…
3 tasks done
1
1
Entrez internal refactoring and minor improvements
#3810 by jlumpe was merged Dec 1, 2021 Loading…
3 tasks done
7
use defined_ranges to simplify code
#3805 by mdehoon was merged Nov 23, 2021 Loading…
3 tasks done
2
Fix Exonerate text parser to recover correct codons at exon-intron boundaries
#3804 by chrisjackson-pellicle was merged Nov 23, 2021 Loading…
3 tasks done
1
3
adding a MAF parser and writer to Bio.Align
#3803 by mdehoon was merged Nov 23, 2021 Loading…
3 tasks done
5
add defined_ranges
#3799 by mdehoon was merged Nov 22, 2021 Loading…
3 tasks done
5
Fix Exonerate text parser to correctly recover hit ranges when frameshifts are present in revcomp hits
#3798 by chrisjackson-pellicle was merged Nov 22, 2021 Loading…
3 tasks done
1
4
Affy CellFile loading fix
#3796 by AlessioQuercia was closed Oct 17, 2022 Loading…
3 tasks done
1
5
Updating codecov 2nd attempt
#3794 by erik-whiting was closed Dec 21, 2023 Loading…
3 tasks done
1
Centralize source of coverage report (WIP)
#3792 by erik-whiting was closed Nov 16, 2021 Loading…
3 tasks done
use bytes if the sequence is fully defined
#3790 by mdehoon was merged Nov 19, 2021 Loading…
3 tasks done
25
Run blacken-docs v1.11.0 on the LaTeX pycon blocks
#3789 by peterjc was merged Nov 12, 2021 Loading…
3 tasks done
5
Deploy API documentation using CircleCI
#3787 by erik-whiting was merged Nov 12, 2021 Loading…
3 tasks done
13
Fix file parser warning. (#3783)
#3786 by anders-was-here was merged Nov 10, 2021 Loading…
3 tasks done
1
8
pre-commit update to black 21.10b0
#3785 by peterjc was merged Nov 8, 2021 Loading…
3 tasks done
1
Adding parser for Stockholm files to Bio.Align
#3782 by mdehoon was merged Nov 10, 2021 Loading…
3 tasks done
8
Fix ladderize (#3780)
#3781 by anders-was-here was merged Nov 10, 2021 Loading…
3 tasks done
7
Add defined attribute to Seq
#3779 by npars was merged Nov 14, 2021 Loading…
3 tasks done
1
19
defaultdict default_factory receives no arguments
#3777 by samuelstanton was merged Apr 11, 2022 Loading…
3 tasks done
2
ProTip! Exclude everything labeled bug with -label:bug.