Skip to content

Pull requests: biopython/biopython

New pull request New
Clear current search query, filters, and sorts
105 Open 3,207 Closed
105 Open 3,207 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Drop deprecated UnknownSeq from Tutorial
#3730 by peterjc was merged Sep 13, 2021 Loading…
3 tasks done
1
Bio.Align: Add parser and writer for XMFA output from Mauve
#3729 by mdehoon was merged Sep 27, 2021 Loading…
3 tasks done
14
Drop experimental warnings on Bio.phenotype
#3728 by peterjc was merged Sep 13, 2021 Loading…
3 tasks done
6
More f-strings mainly on sequence code, using flynt 0.69
#3727 by peterjc was merged Sep 13, 2021 Loading…
3 tasks done
5
take advantage of new reverse_complement function, and avoid using deprecated code
#3726 by mdehoon was merged Sep 11, 2021 Loading…
3 tasks done
1
Correct typo in NEWS.rst
#3725 by chris-rands was merged Sep 11, 2021 Loading…
3 tasks done
2
More f-string conversion using pyupgrade 2.25.0
#3724 by peterjc was merged Sep 11, 2021 Loading…
3 tasks done
4
f-strings in Bio.Seq*, Bio.GenBank, and Bio.PDB using pyupgrade 2.25.0
#3723 by peterjc was merged Sep 10, 2021 Loading…
3 tasks done
2
Code style fixes from pyupgrade 2.25.0
#3722 by peterjc was merged Sep 10, 2021 Loading…
3 tasks done
2
encoding alignments on the reverse strand
#3718 by mdehoon was merged Sep 8, 2021 Loading…
3 tasks done
3
Use https://pre-commit.ci/ for style checks
#3717 by peterjc was merged Sep 8, 2021 Loading…
3 tasks done
16
removing chapter Advanced from the tutorial
#3716 by mdehoon was merged Sep 7, 2021 Loading…
3 tasks done
2
Cache last accessed record in index class
#3715 by peterjc was merged Sep 30, 2021 Loading…
3 tasks done
3
Drop Python 3.6, remove TravisCI config
#3714 by peterjc was merged Sep 6, 2021 Loading…
3 tasks done
2
Subsmat removal
#3713 by mdehoon was merged Sep 6, 2021 Loading…
3 tasks done
1
skip README when loading substitution matrices
#3712 by mdehoon was merged Sep 4, 2021 Loading…
3 tasks done
1
Add a parser for FASTA -m8CB, -m8CC output
#3711 by mdehoon was merged Sep 6, 2021 Loading…
3 tasks done
14
Try replacing any CircleCI SSH key for deployment
#3710 by peterjc was merged Sep 3, 2021 Loading…
3 tasks done
5
Add codespell for documentation to pre-commit
#3709 by peterjc was merged Sep 7, 2021 Loading…
3 tasks done
1
More spelling fixes via codespell
#3708 by peterjc was merged Aug 31, 2021 Loading…
3 tasks done
2
Fix 3696 lcc
#3706 by sbassi was merged Sep 8, 2021 Loading…
3 tasks done
1
7
reverse_complement not in-situ
#3705 by mdehoon was merged Aug 28, 2021 Loading…
3 tasks done
1
Add more Align EMBOSS tests
#3704 by mdehoon was merged Sep 7, 2021 Loading…
3 tasks done
8
Assorted spelling fixes via Codespell
#3703 by peterjc was merged Aug 28, 2021 Loading…
3 tasks done
2
Update pre-commit including move to black 21.7b0
#3702 by peterjc was merged Aug 27, 2021 Loading…
3 tasks done
2
ProTip! Updated in the last three days: updated:>2025-11-10.