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Pull requests list

Don't embed EMBOSS alignments in test scripts
#3701 by peterjc was merged Aug 27, 2021 Loading…
3 tasks done
1
Black tweaks - removing unwanted tailing commas
#3700 by peterjc was merged Aug 27, 2021 Loading…
3 tasks done
8
Added warnings to deprecated arguments
#3699 by timjden was merged Sep 7, 2021 Loading…
3 tasks done
1
15
use a partially defined sequence for a EMBOSS water local alignment
#3697 by mdehoon was merged Aug 27, 2021 Loading…
3 tasks done
2
add Emboss example where a partially defined sequence is needed
#3695 by mdehoon was merged Aug 22, 2021 Loading…
3 tasks done
1
Partially defined sequences
#3691 by mdehoon was merged Aug 22, 2021 Loading…
3 tasks done
24
Assume have sqlite3
#3690 by peterjc was closed Aug 13, 2021 Loading…
3 tasks done
5
make AlignIO imports work without sqlite3
#3687 by natechols was merged Sep 13, 2021 Loading…
21
General improvements to GHA workflows
#3685 by JoaoRodrigues was merged Aug 5, 2021 Loading…
2 tasks done
8
GitHub Actions: Explicitly install wheel for API docs
#3682 by peterjc was merged Aug 2, 2021 Loading…
3 tasks done
5
Refactor GHA CI workflow for speed.
#3681 by JoaoRodrigues was closed Aug 4, 2021 Loading…
2 of 3 tasks
6
Run PyPy workers on Linux only.
#3680 by JoaoRodrigues was merged Aug 1, 2021 Loading…
2 of 3 tasks
1
8
Improvements to PDBIO
#3679 by JoaoRodrigues was merged Aug 4, 2021 Loading…
2 of 3 tasks
1
4
CircleCI for Sphinx API docs
#3678 by peterjc was merged Aug 5, 2021 Loading…
3 tasks done
4
Update README: add GitHub actions badge
#3677 by vimalkvn was merged Aug 1, 2021 Loading…
2 of 3 tasks
6
Skip MAF index test on Windows
#3675 by peterjc was merged Jul 31, 2021 Loading…
3 tasks done
1
2
ensure that nobrief output is handled correctly
#3673 by mdehoon was merged Jul 31, 2021 Loading…
3 tasks done
5
EMBOSS alignment parser, resurrected
#3670 by mdehoon was merged Jul 23, 2021 Loading…
3 tasks done
5
Use yield from in EMBOSS tests
#3669 by mdehoon was merged Jul 21, 2021 Loading…
3 tasks done
2
become code owner of Bio/Seq*.py modules
#3668 by mdehoon was merged Jul 18, 2021 Loading…
3 tasks done
fix typos in the Biopython tutorial
#3666 by mdehoon was merged Jul 15, 2021 Loading…
3 tasks done
2
skip atoms with invalid coords in PERMISSIVE mode
#3664 by andreasntr was closed Aug 1, 2021 Loading…
3 tasks done
@JoaoRodrigues
6
Fix order of SnapGene join features on reverse strand
#3662 by gouttegd was merged Sep 7, 2021 Loading…
3 tasks done
1
5
Index MAF files in binary mode
#3661 by peterjc was merged Jan 4, 2025 Loading…
3 tasks done
2
5
SearchIO query pop: add test and code cleanup
#3660 by fabianegli was merged Nov 25, 2021 Loading…
3 tasks done
1
11
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