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Pull requests: biopython/biopython

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Pull requests list

emboss parser for Alignment
#3657 by mdehoon was closed Jul 21, 2021 Loading…
3 tasks done
Seq and SeqRecord can now use numpy int
#3654 by mdehoon was merged Jul 6, 2021 Loading…
3 tasks done
Silence source import warning in dev mode
#3653 by peterjc was merged Jul 19, 2021 Loading…
3 tasks done
Fixing typo in SeqIO documentation
#3652 by mdehoon was merged Jul 2, 2021 Loading…
3 tasks done
The tf_class and tf_family in Bio.motifs.jaspar.db should be string array
#3651 by asntech was merged Jul 2, 2021 Loading…
3 tasks done
add support for gaf2.2 format
#3650 by alpae was merged Jul 4, 2021 Loading…
3 tasks done
make complement, reverse_complement consistent
#3648 by mdehoon was merged Jul 21, 2021 Loading…
3 tasks done
fix typos and stray code in reverse_complement
#3646 by mdehoon was merged Jun 28, 2021 Loading…
3 tasks done
reverse_complement on SeqRecord
#3643 by mdehoon was closed Jun 28, 2021 Loading…
3 tasks done
replace isinstance(int) by isinstance(numbers.Integral)
#3642 by mdehoon was merged Jun 28, 2021 Loading…
3 tasks done
Add timeouts to CI steps.
#3639 by JoaoRodrigues was closed Aug 1, 2021 Loading…
remove unused imports in Bio.SeqIO
#3638 by mdehoon was merged Jun 25, 2021 Loading…
3 tasks done
Remove deprecation entries over 10 years old.
#3637 by peterjc was merged Jun 25, 2021 Loading…
3 tasks done
aligner documentation update
#3633 by mdehoon was merged Jul 1, 2021 Loading…
3 tasks done
fix error code for Mac OS X
#3631 by mdehoon was merged Jun 20, 2021 Loading…
3 tasks done
Remove assert bgzf #3600
#3629 by vincentdavis was merged Sep 22, 2021 Loading…
3 tasks done
Update MultipleSeqAlignment format method
#3628 by peterjc was closed Jul 31, 2021 Loading…
3 tasks done
enable kegg_get to download json files
#3625 by Hocnonsense was merged Jul 1, 2021 Loading…
1 of 3 tasks
Generalize PairwiseAlignment to include multiple alignments
#3624 by mdehoon was merged Jul 5, 2021 Loading…
3 tasks done
simplify Bio.Entrez
#3622 by mdehoon was merged Jun 13, 2021 Loading…
3 tasks done
allow Entrez records to be pickled
#3621 by mdehoon was merged Jun 13, 2021 Loading…
3 tasks done
use numpy for the aligned property of PairwiseAlignment
#3620 by mdehoon was merged Jun 12, 2021 Loading…
3 tasks done
simplify substitutions
#3618 by mdehoon was merged Jun 12, 2021 Loading…
3 tasks done
enable kegg_get to download json files
#3617 by Hocnonsense was closed Jun 14, 2021 Loading…
2 of 3 tasks
In PairwiseAlignment, store sequences under a single attribute
#3616 by mdehoon was merged Jun 12, 2021 Loading…
3 tasks done
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