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Pull requests list

Fix "failed to understand molecule_type 'dna'"
#3476 by innovate-invent was merged Feb 15, 2021 Loading…
1 of 3 tasks
17
Issue 3466 fix
#3474 by noamkremen was closed Feb 7, 2021 Loading…
4
Issue 3466
#3473 by widdowquinn was merged Feb 6, 2021 Loading…
3 tasks done
1
4
Reformatted output of get_KGML to satisfy KGML_v0.7.2_.dtd
#3472 by iquasere was closed Oct 18, 2022 Loading…
3 tasks done
1
4
Iqtree
#3470 by Erundil95 was closed Jan 25, 2021 Loading…
3 tasks done
5
Re-run pyupgrade on python codebase
#3463 by chris-rands was merged Jan 11, 2021 Loading…
1 of 3 tasks
4
check alignments index value
#3460 by chenzhiw was closed Oct 7, 2022 Loading…
4
Minimal CircleCI Linux testing integration
#3458 by peterjc was merged Jan 7, 2021 Loading…
3 tasks done
4
Solve flake8-bugbear v20.11.1 warnings
#3457 by peterjc was merged Dec 30, 2020 Loading…
3 tasks done
1
Seq baseclass
#3455 by mdehoon was merged Feb 7, 2021 Loading…
3 tasks done
16
Generator typehints for Structure, Model, Residues, Atoms classes
#3454 by rtviii was closed Jun 18, 2021 Loading…
3 tasks done
6
remove deprecated argument
#3452 by mdehoon was merged Jan 6, 2021 Loading…
3 tasks done
2
Seq bytes
#3451 by mdehoon was merged Dec 24, 2020 Loading…
3 tasks done
22
DSSP chain label correction for mmCIF files, mark II
#3450 by jgreener64 was merged Dec 31, 2020 Loading…
3 tasks done
1
9
Seq equality and comparisons consistent
#3449 by mdehoon was merged Dec 20, 2020 Loading…
3 tasks done
2
deprecate UnknownSeq
#3446 by mdehoon was merged Dec 19, 2020 Loading…
3 tasks done
3
use an abstract base class for sequence content providers in Bio.Seq
#3445 by mdehoon was merged Dec 17, 2020 Loading…
3 tasks done
1
support pickling in Bio.Align.substitution_matrices
#3442 by mdehoon was merged Dec 12, 2020 Loading…
3 tasks done
1
1
use UndefinedSequenceData for undefined sequences
#3440 by mdehoon was merged Dec 15, 2020 Loading…
3 tasks done
13
Improvements to Entrez tests
#3437 by jlumpe was merged Dec 11, 2020 Loading…
3 tasks done
6
minor cleanup in Bio.Seq
#3435 by mdehoon was merged Dec 7, 2020 Loading…
3 tasks done
2
that never actually happens
#3434 by mdehoon was merged Dec 6, 2020 Loading…
3 tasks done
2
Entrez id handling
#3432 by jlumpe was merged Oct 17, 2022 Loading…
3 tasks done
25
add lower and upper to MutableSeq
#3430 by mdehoon was merged Dec 7, 2020 Loading…
3 tasks done
9
remove deprecated code
#3429 by mdehoon was merged Dec 13, 2020 Loading…
3 tasks done
4
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