From 4db2a437b2fb1f477e04c669f221b1298fad2680 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Mihai=20Capot=C4=83?= Date: Tue, 23 May 2017 09:54:44 -0700 Subject: [PATCH] [docs] Cite all references Fixes warnings introduced in Spinx 1.6.1: https://github.com/sphinx-doc/sphinx/pull/3565 --- brainiak/factoranalysis/htfa.py | 3 ++- brainiak/factoranalysis/tfa.py | 3 ++- brainiak/fcma/__init__.py | 2 +- brainiak/hyperparamopt/hpo.py | 3 ++- brainiak/reprsimil/brsa.py | 2 +- 5 files changed, 8 insertions(+), 5 deletions(-) diff --git a/brainiak/factoranalysis/htfa.py b/brainiak/factoranalysis/htfa.py index cbbada773..dd02fcc57 100644 --- a/brainiak/factoranalysis/htfa.py +++ b/brainiak/factoranalysis/htfa.py @@ -13,7 +13,8 @@ # limitations under the License. """Hierarchical Topographical Factor Analysis (HTFA) -This implementation is based on the following publications: +This implementation is based on the work in [Manning2014-1]_, [Manning2014-2]_, +and [AndersonMJ2016]_. .. [Manning2014-1] "Topographic factor analysis: a bayesian model for inferring brain networks from neural data", J. R. Manning, diff --git a/brainiak/factoranalysis/tfa.py b/brainiak/factoranalysis/tfa.py index 2ef4600d2..a9d214b17 100644 --- a/brainiak/factoranalysis/tfa.py +++ b/brainiak/factoranalysis/tfa.py @@ -13,7 +13,8 @@ # limitations under the License. """Topographical Factor Analysis (TFA) -This implementation is based on the work: +This implementation is based on the work in [Manning2014]_ and +[AndersonM2016]_. .. [Manning2014] "Topographic factor analysis: a bayesian model for inferring brain networks from neural data", J. R. Manning, R. Ranganath, K. A. Norman, diff --git a/brainiak/fcma/__init__.py b/brainiak/fcma/__init__.py index a3485d6d8..847043abb 100644 --- a/brainiak/fcma/__init__.py +++ b/brainiak/fcma/__init__.py @@ -13,7 +13,7 @@ # limitations under the License. """Full correlation matrix analysis -The implementation is based on the following publications: +The implementation is based on the work in [Wang2015-1]_ and [Wang2015-2]_. .. [Wang2015-1] Full correlation matrix analysis (FCMA): An unbiased method for task-related functional connectivity", diff --git a/brainiak/hyperparamopt/hpo.py b/brainiak/hyperparamopt/hpo.py index aeef6e075..fc2be65de 100644 --- a/brainiak/hyperparamopt/hpo.py +++ b/brainiak/hyperparamopt/hpo.py @@ -13,7 +13,8 @@ # limitations under the License. """Hyper Parameter Optimization (HPO) -This implementation is based on the work: +This implementation is based on the work in [Bergstra2011]_ and +[Bergstra2013]_. .. [Bergstra2011] "Algorithms for Hyper-Parameter Optimization", James S. Bergstra and Bardenet, Rémi and Bengio, Yoshua diff --git a/brainiak/reprsimil/brsa.py b/brainiak/reprsimil/brsa.py index 59a466ced..a4a42e762 100755 --- a/brainiak/reprsimil/brsa.py +++ b/brainiak/reprsimil/brsa.py @@ -14,7 +14,7 @@ # limitations under the License. """ Bayesian Representational Similarity Analysis (BRSA) - This implementation is based on the following publications: + This implementation is based the work in [Cai2016]_. .. [Cai2016] "A Bayesian method for reducing bias in neural representational similarity analysis",