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Jumpled up text in Jupyterlab version 4.3.2 #17073

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ptrber opened this issue Dec 11, 2024 · 1 comment
Open

Jumpled up text in Jupyterlab version 4.3.2 #17073

ptrber opened this issue Dec 11, 2024 · 1 comment
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bug status:Needs Triage Applied to new issues that need triage

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@ptrber
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ptrber commented Dec 11, 2024 •
edited by krassowski
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Description

Write text with cell type set to Raw:
To be conservately set dS = dL = d(sec) = 2.7 m
Table 4.7 leakage plus forward/backscatter (a conservatively high assumptiogives the total unshielded airmaer a patient 4.9e-2 mGy/pat (Rad Room all barriers) workload distribution.

Select cell type Markdown:
To be
conservatelyeset dS = d =c d(sec) = 2.7m
Table 4.7leakage
plus forward/backscatter (a conservatively high assumptiogives

Reproduce

To get text jumbled up in a cell. do:
select Markdown and execute the cell.

Expected behavior

Context

  • Operating System and version: Fedora 41
  • Browser and version: Firefox version 133
  • JupyterLab version: 4.3.2
Troubleshoot Output 
jupyter troubleshoot
$PATH:
	/home/peter/anaconda3/envs/shield/bin

sys.path:

/home/peter/anaconda3/envs/shield/bin


sys.executable:

/home/peter/anaconda3/envs/shield/bin/python


sys.version:

3.12.7 | packaged by Anaconda, Inc. | (main, Oct  4 2024, 13:27:36) [GCC 11.2.0]


platform.platform():

Linux-6.11.10-300.fc41.x86_64-x86_64-with-glibc2.40


which -a jupyter:

/home/peter/anaconda3/envs/shield/bin/jupyter


pip list:

Package                   Version

------------------------- --------------

anyio                     4.6.2

argon2-cffi               21.3.0

argon2-cffi-bindings      21.2.0

arrow                     1.3.0

asttokens                 2.0.5

async-lru                 2.0.4

attrs                     24.2.0

Babel                     2.11.0

beautifulsoup4            4.12.3

bleach                    6.2.0

Brotli                    1.0.9

certifi                   2024.8.30

cffi                      1.17.1

charset-normalizer        3.3.2

comm                      0.2.1

debugpy                   1.6.7

decorator                 5.1.1

defusedxml                0.7.1

executing                 0.8.3

fastjsonschema            2.20.0

fqdn                      1.5.1

h11                       0.14.0

httpcore                  1.0.2

httpx                     0.28.1

idna                      3.7

ipykernel                 6.29.5

ipython                   8.27.0

isoduration               20.11.0

jedi                      0.19.1

Jinja2                    3.1.4

json5                     0.9.25

jsonpointer               3.0.0

jsonschema                4.23.0

jsonschema-specifications 2023.7.1

jupyter_client            8.6.0

jupyter_core              5.7.2

jupyter-events            0.10.0

jupyter-lsp               2.2.0

jupyter_server            2.14.1

jupyter_server_terminals  0.4.4

jupyterlab                4.3.2

jupyterlab-pygments       0.1.2

jupyterlab_server         2.27.3

jupyterlab-vim            4.1.4

MarkupSafe                2.1.3

matplotlib-inline         0.1.6

mistune                   2.0.4

mkl_fft                   1.3.11

mkl_random                1.2.8

mkl-service               2.4.0

nbclient                  0.8.0

nbconvert                 7.16.4

nbformat                  5.10.4

nest-asyncio              1.6.0

notebook                  7.3.1

notebook_shim             0.2.3

numpy                     2.1.3

overrides                 7.4.0

packaging                 24.1

pandocfilters             1.5.0

parso                     0.8.3

pexpect                   4.8.0

pip                       24.2

platformdirs              3.10.0

prometheus_client         0.21.0

prompt-toolkit            3.0.43

psutil                    5.9.0

ptyprocess                0.7.0

pure-eval                 0.2.2

pycparser                 2.21

Pygments                  2.15.1

PySocks                   1.7.1

python-dateutil           2.9.0.post0

python-json-logger        2.0.7

pytz                      2024.1

PyYAML                    6.0.2

pyzmq                     25.1.2

referencing               0.30.2

requests                  2.32.3

rfc3339-validator         0.1.4

rfc3986-validator         0.1.1

rpds-py                   0.10.6

Send2Trash                1.8.2

setuptools                72.1.0

six                       1.16.0

sniffio                   1.3.0

soupsieve                 2.5

stack-data                0.2.0

terminado                 0.17.1

tinycss2                  1.2.1

tornado                   6.4.1

traitlets                 5.14.3

types-python-dateutil     2.9.0.20241206

typing_extensions         4.11.0

uri-template              1.3.0

urllib3                   2.2.3

wcwidth                   0.2.5

webcolors                 24.11.1

webencodings              0.5.1

websocket-client          1.8.0

wheel                     0.44.0


conda list:

# packages in environment at /home/peter/anaconda3/envs/shield:

#

# Name                    Version                   Build  Channel

_libgcc_mutex             0.1                        main

_openmp_mutex             5.1                       1_gnu

anyio                     4.6.2           py312h06a4308_0

argon2-cffi               21.3.0             pyhd3eb1b0_0

argon2-cffi-bindings      21.2.0          py312h5eee18b_0

arrow                     1.3.0                    pypi_0    pypi

asttokens                 2.0.5              pyhd3eb1b0_0

async-lru                 2.0.4           py312h06a4308_0

attrs                     24.2.0          py312h06a4308_0

babel                     2.11.0          py312h06a4308_0

beautifulsoup4            4.12.3          py312h06a4308_0

blas                      1.0                         mkl

bleach                    6.2.0           py312h06a4308_0

brotli-python             1.0.9           py312h6a678d5_8

bzip2                     1.0.8                h5eee18b_6

ca-certificates           2024.11.26           h06a4308_0

certifi                   2024.8.30       py312h06a4308_0

cffi                      1.17.1          py312h1fdaa30_0

charset-normalizer        3.3.2              pyhd3eb1b0_0

comm                      0.2.1           py312h06a4308_0

debugpy                   1.6.7           py312h6a678d5_0

decorator                 5.1.1              pyhd3eb1b0_0

defusedxml                0.7.1              pyhd3eb1b0_0

executing                 0.8.3              pyhd3eb1b0_0

expat                     2.6.3                h6a678d5_0

fqdn                      1.5.1                    pypi_0    pypi

h11                       0.14.0          py312h06a4308_0

httpcore                  1.0.2           py312h06a4308_0

httpx                     0.28.1                   pypi_0    pypi

idna                      3.7             py312h06a4308_0

intel-openmp              2023.1.0         hdb19cb5_46306

ipykernel                 6.29.5          py312h06a4308_0

ipython                   8.27.0          py312h06a4308_0

isoduration               20.11.0                  pypi_0    pypi

jedi                      0.19.1          py312h06a4308_0

jinja2                    3.1.4           py312h06a4308_1

json5                     0.9.25          py312h06a4308_0

jsonpointer               3.0.0                    pypi_0    pypi

jsonschema                4.23.0          py312h06a4308_0

jsonschema-specifications 2023.7.1        py312h06a4308_0

jupyter-lsp               2.2.0           py312h06a4308_0

jupyter_client            8.6.0           py312h06a4308_0

jupyter_core              5.7.2           py312h06a4308_0

jupyter_events            0.10.0          py312h06a4308_0

jupyter_server            2.14.1          py312h06a4308_0

jupyter_server_terminals  0.4.4           py312h06a4308_1

jupyterlab                4.3.2                    pypi_0    pypi

jupyterlab-vim            4.1.4                    pypi_0    pypi

jupyterlab_pygments       0.1.2                      py_0

jupyterlab_server         2.27.3          py312h06a4308_0

ld_impl_linux-64          2.40                 h12ee557_0

libffi                    3.4.4                h6a678d5_1

libgcc-ng                 11.2.0               h1234567_1

libgomp                   11.2.0               h1234567_1

libsodium                 1.0.18               h7b6447c_0

libstdcxx-ng              11.2.0               h1234567_1

libuuid                   1.41.5               h5eee18b_0

markupsafe                2.1.3           py312h5eee18b_0

matplotlib-inline         0.1.6           py312h06a4308_0

mistune                   2.0.4           py312h06a4308_0

mkl                       2023.1.0         h213fc3f_46344

mkl-service               2.4.0           py312h5eee18b_1

mkl_fft                   1.3.11          py312h5eee18b_0

mkl_random                1.2.8           py312h526ad5a_0

nbclient                  0.8.0           py312h06a4308_0

nbconvert                 7.16.4          py312h06a4308_0

nbformat                  5.10.4          py312h06a4308_0

ncurses                   6.4                  h6a678d5_0

nest-asyncio              1.6.0           py312h06a4308_0

notebook                  7.3.1                    pypi_0    pypi

notebook-shim             0.2.3           py312h06a4308_0

numpy                     2.1.3           py312hc5e2394_0

numpy-base                2.1.3           py312h0da6c21_0

openssl                   3.0.15               h5eee18b_0

overrides                 7.4.0           py312h06a4308_0

packaging                 24.1            py312h06a4308_0

pandocfilters             1.5.0              pyhd3eb1b0_0

parso                     0.8.3              pyhd3eb1b0_0

pexpect                   4.8.0              pyhd3eb1b0_3

pip                       24.2            py312h06a4308_0

platformdirs              3.10.0          py312h06a4308_0

prometheus_client         0.21.0          py312h06a4308_0

prompt-toolkit            3.0.43          py312h06a4308_0

prompt_toolkit            3.0.43               hd3eb1b0_0

psutil                    5.9.0           py312h5eee18b_0

ptyprocess                0.7.0              pyhd3eb1b0_2

pure_eval                 0.2.2              pyhd3eb1b0_0

pycparser                 2.21               pyhd3eb1b0_0

pygments                  2.15.1          py312h06a4308_1

pysocks                   1.7.1           py312h06a4308_0

python                    3.12.7               h5148396_0

python-dateutil           2.9.0post0      py312h06a4308_2

python-fastjsonschema     2.20.0          py312h06a4308_0

python-json-logger        2.0.7           py312h06a4308_0

pytz                      2024.1          py312h06a4308_0

pyyaml                    6.0.2           py312h5eee18b_0

pyzmq                     25.1.2          py312h6a678d5_0

readline                  8.2                  h5eee18b_0

referencing               0.30.2          py312h06a4308_0

requests                  2.32.3          py312h06a4308_1

rfc3339-validator         0.1.4           py312h06a4308_0

rfc3986-validator         0.1.1           py312h06a4308_0

rpds-py                   0.10.6          py312h4aa5aa6_1

send2trash                1.8.2           py312h06a4308_0

setuptools                72.1.0          py312h06a4308_0

six                       1.16.0             pyhd3eb1b0_1

sniffio                   1.3.0           py312h06a4308_0

soupsieve                 2.5             py312h06a4308_0

sqlite                    3.45.3               h5eee18b_0

stack_data                0.2.0              pyhd3eb1b0_0

tbb                       2021.8.0             hdb19cb5_0

terminado                 0.17.1          py312h06a4308_0

tinycss2                  1.2.1           py312h06a4308_0

tk                        8.6.14               h39e8969_0

tornado                   6.4.1           py312h5eee18b_0

traitlets                 5.14.3          py312h06a4308_0

types-python-dateutil     2.9.0.20241206           pypi_0    pypi

typing-extensions         4.11.0          py312h06a4308_0

typing_extensions         4.11.0          py312h06a4308_0

tzdata                    2024b                h04d1e81_0

uri-template              1.3.0                    pypi_0    pypi

urllib3                   2.2.3           py312h06a4308_0

wcwidth                   0.2.5              pyhd3eb1b0_0

webcolors                 24.11.1                  pypi_0    pypi

webencodings              0.5.1           py312h06a4308_2

websocket-client          1.8.0           py312h06a4308_0

wheel                     0.44.0          py312h06a4308_0

xz                        5.4.6                h5eee18b_1

yaml                      0.2.5                h7b6447c_0

zeromq                    4.3.5                h6a678d5_0

zlib                      1.2.13               h5eee18b_1


conda env:

name: shield

channels:

- defaults

- https://repo.anaconda.com/pkgs/main

- https://repo.anaconda.com/pkgs/r

dependencies:

- _libgcc_mutex=0.1=main

- _openmp_mutex=5.1=1_gnu

- anyio=4.6.2=py312h06a4308_0

- argon2-cffi=21.3.0=pyhd3eb1b0_0

- argon2-cffi-bindings=21.2.0=py312h5eee18b_0

- asttokens=2.0.5=pyhd3eb1b0_0

- async-lru=2.0.4=py312h06a4308_0

- attrs=24.2.0=py312h06a4308_0

- babel=2.11.0=py312h06a4308_0

- beautifulsoup4=4.12.3=py312h06a4308_0

- blas=1.0=mkl

- bleach=6.2.0=py312h06a4308_0

- brotli-python=1.0.9=py312h6a678d5_8

- bzip2=1.0.8=h5eee18b_6

- ca-certificates=2024.11.26=h06a4308_0

- certifi=2024.8.30=py312h06a4308_0

- cffi=1.17.1=py312h1fdaa30_0

- charset-normalizer=3.3.2=pyhd3eb1b0_0

- comm=0.2.1=py312h06a4308_0

- debugpy=1.6.7=py312h6a678d5_0

- decorator=5.1.1=pyhd3eb1b0_0

- defusedxml=0.7.1=pyhd3eb1b0_0

- executing=0.8.3=pyhd3eb1b0_0

- expat=2.6.3=h6a678d5_0

- h11=0.14.0=py312h06a4308_0

- httpcore=1.0.2=py312h06a4308_0

- idna=3.7=py312h06a4308_0

- intel-openmp=2023.1.0=hdb19cb5_46306

- ipykernel=6.29.5=py312h06a4308_0

- ipython=8.27.0=py312h06a4308_0

- jedi=0.19.1=py312h06a4308_0

- jinja2=3.1.4=py312h06a4308_1

- json5=0.9.25=py312h06a4308_0

- jsonschema=4.23.0=py312h06a4308_0

- jsonschema-specifications=2023.7.1=py312h06a4308_0

- jupyter-lsp=2.2.0=py312h06a4308_0

- jupyter_client=8.6.0=py312h06a4308_0

- jupyter_core=5.7.2=py312h06a4308_0

- jupyter_events=0.10.0=py312h06a4308_0

- jupyter_server=2.14.1=py312h06a4308_0

- jupyter_server_terminals=0.4.4=py312h06a4308_1

- jupyterlab_pygments=0.1.2=py_0

- jupyterlab_server=2.27.3=py312h06a4308_0

- ld_impl_linux-64=2.40=h12ee557_0

- libffi=3.4.4=h6a678d5_1

- libgcc-ng=11.2.0=h1234567_1

- libgomp=11.2.0=h1234567_1

- libsodium=1.0.18=h7b6447c_0

- libstdcxx-ng=11.2.0=h1234567_1

- libuuid=1.41.5=h5eee18b_0

- markupsafe=2.1.3=py312h5eee18b_0

- matplotlib-inline=0.1.6=py312h06a4308_0

- mistune=2.0.4=py312h06a4308_0

- mkl=2023.1.0=h213fc3f_46344

- mkl-service=2.4.0=py312h5eee18b_1

- mkl_fft=1.3.11=py312h5eee18b_0

- mkl_random=1.2.8=py312h526ad5a_0

- nbclient=0.8.0=py312h06a4308_0

- nbconvert=7.16.4=py312h06a4308_0

- nbformat=5.10.4=py312h06a4308_0

- ncurses=6.4=h6a678d5_0

- nest-asyncio=1.6.0=py312h06a4308_0

- notebook-shim=0.2.3=py312h06a4308_0

- numpy=2.1.3=py312hc5e2394_0

- numpy-base=2.1.3=py312h0da6c21_0

- openssl=3.0.15=h5eee18b_0

- overrides=7.4.0=py312h06a4308_0

- packaging=24.1=py312h06a4308_0

- pandocfilters=1.5.0=pyhd3eb1b0_0

- parso=0.8.3=pyhd3eb1b0_0

- pexpect=4.8.0=pyhd3eb1b0_3

- pip=24.2=py312h06a4308_0

- platformdirs=3.10.0=py312h06a4308_0

- prometheus_client=0.21.0=py312h06a4308_0

- prompt-toolkit=3.0.43=py312h06a4308_0

- prompt_toolkit=3.0.43=hd3eb1b0_0

- psutil=5.9.0=py312h5eee18b_0

- ptyprocess=0.7.0=pyhd3eb1b0_2

- pure_eval=0.2.2=pyhd3eb1b0_0

- pycparser=2.21=pyhd3eb1b0_0

- pygments=2.15.1=py312h06a4308_1

- pysocks=1.7.1=py312h06a4308_0

- python=3.12.7=h5148396_0

- python-dateutil=2.9.0post0=py312h06a4308_2

- python-fastjsonschema=2.20.0=py312h06a4308_0

- python-json-logger=2.0.7=py312h06a4308_0

- pytz=2024.1=py312h06a4308_0

- pyyaml=6.0.2=py312h5eee18b_0

- pyzmq=25.1.2=py312h6a678d5_0

- readline=8.2=h5eee18b_0

- referencing=0.30.2=py312h06a4308_0

- requests=2.32.3=py312h06a4308_1

- rfc3339-validator=0.1.4=py312h06a4308_0

- rfc3986-validator=0.1.1=py312h06a4308_0

- rpds-py=0.10.6=py312h4aa5aa6_1

- send2trash=1.8.2=py312h06a4308_0

- setuptools=72.1.0=py312h06a4308_0

- six=1.16.0=pyhd3eb1b0_1

- sniffio=1.3.0=py312h06a4308_0

- soupsieve=2.5=py312h06a4308_0

- sqlite=3.45.3=h5eee18b_0

- stack_data=0.2.0=pyhd3eb1b0_0

- tbb=2021.8.0=hdb19cb5_0

- terminado=0.17.1=py312h06a4308_0

- tinycss2=1.2.1=py312h06a4308_0

- tk=8.6.14=h39e8969_0

- tornado=6.4.1=py312h5eee18b_0

- traitlets=5.14.3=py312h06a4308_0

- typing-extensions=4.11.0=py312h06a4308_0

- typing_extensions=4.11.0=py312h06a4308_0

- tzdata=2024b=h04d1e81_0

- urllib3=2.2.3=py312h06a4308_0

- wcwidth=0.2.5=pyhd3eb1b0_0

- webencodings=0.5.1=py312h06a4308_2

- websocket-client=1.8.0=py312h06a4308_0

- wheel=0.44.0=py312h06a4308_0

- xz=5.4.6=h5eee18b_1

- yaml=0.2.5=h7b6447c_0

- zeromq=4.3.5=h6a678d5_0

- zlib=1.2.13=h5eee18b_1

- pip:

- arrow==1.3.0

- fqdn==1.5.1

- httpx==0.28.1

- isoduration==20.11.0

- jsonpointer==3.0.0

- jupyterlab==4.3.2

- jupyterlab-vim==4.1.4

- notebook==7.3.1

- types-python-dateutil==2.9.0.20241206

- uri-template==1.3.0

- webcolors==24.11.1

prefix: /home/peter/anaconda3/envs/shield


Command Line Output

Paste the output from your command line running `jupyter lab` here, use `--debug` if possible.




[I 2024-12-11 15:10:25.693 ServerApp] jupyter_lsp | extension was successfully linked.
[I 2024-12-11 15:10:25.696 ServerApp] jupyter_server_terminals | extension was successfully linked.
[I 2024-12-11 15:10:25.699 ServerApp] jupyterlab | extension was successfully linked.
[I 2024-12-11 15:10:25.703 ServerApp] notebook | extension was successfully linked.
[I 2024-12-11 15:10:25.867 ServerApp] notebook_shim | extension was successfully linked.
[I 2024-12-11 15:10:25.879 ServerApp] notebook_shim | extension was successfully loaded.
[I 2024-12-11 15:10:25.881 ServerApp] jupyter_lsp | extension was successfully loaded.
[I 2024-12-11 15:10:25.881 ServerApp] jupyter_server_terminals | extension was successfully loaded.
[I 2024-12-11 15:10:25.883 LabApp] JupyterLab extension loaded from /home/peter/anaconda3/envs/shield/lib/python3.12/site-packages/jupyterlab
[I 2024-12-11 15:10:25.883 LabApp] JupyterLab application directory is /home/peter/anaconda3/envs/shield/share/jupyter/lab
[I 2024-12-11 15:10:25.883 LabApp] Extension Manager is 'pypi'.
[I 2024-12-11 15:10:25.931 ServerApp] jupyterlab | extension was successfully loaded.
[I 2024-12-11 15:10:25.934 ServerApp] notebook | extension was successfully loaded.
[I 2024-12-11 15:10:25.935 ServerApp] The port 8888 is already in use, trying another port.
[I 2024-12-11 15:10:25.935 ServerApp] The port 8889 is already in use, trying another port.
[I 2024-12-11 15:10:25.935 ServerApp] Serving notebooks from local directory: /home/peter/Documents/shielding
[I 2024-12-11 15:10:25.935 ServerApp] Jupyter Server 2.14.1 is running at:
[I 2024-12-11 15:10:25.935 ServerApp] http://localhost:8890/lab?token=10eeb1f9da997b6eec6b757dbab33a1d39cbeaf55324a100
[I 2024-12-11 15:10:25.935 ServerApp]     http://127.0.0.1:8890/lab?token=10eeb1f9da997b6eec6b757dbab33a1d39cbeaf55324a100
[I 2024-12-11 15:10:25.935 ServerApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[C 2024-12-11 15:10:25.947 ServerApp] 

To access the server, open this file in a browser:
    file:///home/peter/.local/share/jupyter/runtime/jpserver-22852-open.html
Or copy and paste one of these URLs:
    http://localhost:8890/lab?token=10eeb1f9da997b6eec6b757dbab33a1d39cbeaf55324a100
    http://127.0.0.1:8890/lab?token=10eeb1f9da997b6eec6b757dbab33a1d39cbeaf55324a100



[I 2024-12-11 15:10:25.961 ServerApp] Skipped non-installed server(s): bash-language-server, dockerfile-language-server-nodejs, javascript-typescript-langserver, jedi-language-server, julia-language-server, pyright, python-language-server, python-lsp-server, r-languageserver, sql-language-server, texlab, typescript-language-server, unified-language-server, vscode-css-languageserver-bin, vscode-html-languageserver-bin, vscode-json-languageserver-bin, yaml-language-server

[W 2024-12-11 15:10:28.082 LabApp] Could not determine jupyterlab build status without nodejs

[I 2024-12-11 15:10:28.554 ServerApp] New terminal with automatic name: 1

[I 2024-12-11 15:10:28.588 ServerApp] Kernel started: 9746c73a-9b41-4f2c-b3ed-0bef31ac537d

[I 2024-12-11 15:10:29.368 ServerApp] Connecting to kernel 9746c73a-9b41-4f2c-b3ed-0bef31ac537d.

[I 2024-12-11 15:10:29.372 ServerApp] Connecting to kernel 9746c73a-9b41-4f2c-b3ed-0bef31ac537d.
Browser Output 
Paste the output from your browser Javascript console here, if applicable.
@ptrber ptrber added the bug label Dec 11, 2024
@jupyterlab-probot jupyterlab-probot bot added the status:Needs Triage Applied to new issues that need triage label Dec 11, 2024
@krassowski
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This is interesting. I cannot reproduce this in Firefox. Can you share a screenshot for completness (maybe we could see something else that is unusual).

  1. When you copy-paste the text from this issue does it also happen? I wonder if there were some hidden characters leading to markdown rendering
  2. When you enter the Markdown cell (un-render it by clicking twice) is the original text preserved?
  3. Could you try a couple different versions? If you cannot install, you could try testing on Binder https://gist.github.com/krassowski/68adb59038d7334d698bea811ad4b039 (note, it can take a few minutes to load)

JupyterLab version: 4.3.2

FYI version 4.3.3 is out now. There were no changes to markdown rendering so I don't think it would help much.

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@krassowski @ptrber