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docker-builds Public
Forked from StaPH-B/docker-builds📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
Dockerfile GNU General Public License v3.0 UpdatedDec 8, 2025 -
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jvhagey.github.io Public
Home page that links all github projects
SCSS MIT License UpdatedMar 23, 2025 -
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phoenix Public
Forked from CDCgov/phoenix🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
Python Apache License 2.0 UpdatedMar 22, 2023 -
GAMMA Public
Forked from rastanton/GAMMAGene Allele Mutation Microbial Assessment
Python Apache License 2.0 UpdatedAug 22, 2022 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedMay 25, 2022 -
datasets-sars-cov-2 Public
Forked from CDCgov/datasets-sars-cov-2Perl Apache License 2.0 UpdatedMay 10, 2022 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedMay 2, 2022 -
Depeters_RumenSampling_2018 Public
16s analysis for Depeters rumen sampling study
HTML UpdatedApr 26, 2022 -
Utility_Scripts Public
A variety of scripts used to process or parse sequencing files
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Machine learning project for cryptosporidum comparative genomics
HTML UpdatedOct 13, 2021 -
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public_health_viral_genomics Public
Forked from theiagen/public_health_viral_genomicsWDL GNU Affero General Public License v3.0 UpdatedMay 26, 2021 -
documentation-theme-jekyll Public
Forked from tomjoht/documentation-theme-jekyllA Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.
HTML UpdatedMar 28, 2021 -
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KrakenTools Public
Forked from jenniferlu717/KrakenToolsKrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Python GNU General Public License v3.0 UpdatedOct 28, 2020 -
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CDRF_Metagenomics Public
Scripts used for processing of metagenomic data on CDRF project
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Scripts for 16S sequence processing and R analysis
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alembic Public
Forked from daviddarnes/alembic⚗️ A Jekyll boilerplate theme designed to be a starting point for any Jekyll website
CSS MIT License UpdatedJul 9, 2019 -
lantaoyu.github.io Public
Forked from LantaoYu/lantaoyu.github.ioGithub Pages template for academic personal websites
JavaScript MIT License UpdatedJun 16, 2019 -
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