State is a machine learning model that predicts cellular perturbation response across diverse contexts

Modeling whole bacterial genome as a sequence of proteins.

Comprehensive suite for evaluating perturbation prediction models

Arc Virtual Cell Atlas

DANCE: a deep learning library and benchmark platform for single-cell analysis

A CLI tool to fetch research papers from PubMed, extract key details (title, authors, affiliations, email, etc.), and save results in a CSV file. Uses the PubMed API via Biopython and supports quer…

cameo - computer aided metabolic engineering & optimization

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

Sync library

scDeepCluster for Single Cell RNA-seq data

Deep learning-based feature selection for single-cell omics data

Cell cycle inference in single-cell RNA-seq

A Google Keep clone, that follows the same design pattern as the original. Made with Angular.

Single Cell Classification using RNA-seq data and Supervised Learning Algorithms