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DESCRIPTION
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DESCRIPTION
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Package: dendextend
Type: Package
Title: Extending 'dendrogram' Functionality in R
Version: 1.18.1
Date: 2024-10-12
Authors@R: c(person("Tal", "Galili", role = c("aut", "cre", "cph"), email =
"tal.galili@gmail.com", comment = "https://www.r-statistics.com"),
person("Yoav", "Benjamini", email = "ybenja@tau.ac.il",role = "ths"),
person("Gavin", "Simpson", role = "ctb"), person("Gregory","Jefferis", role
= c("aut", "ctb"), email = "jefferis@gmail.com",
comment ="imported code from his dendroextras package"),
person("Marco", "Gallotta", role = "ctb", comment =
"a.k.a: marcog") , person("Johan", "Renaudie", role = "ctb", comment =
"https://github.com/plannapus"), person("The R Core Team", role = "ctb",
comment = "Thanks for the Infastructure, and code in the examples"),
person("Kurt", "Hornik", role = "ctb"), person("Uwe", "Ligges",
role = "ctb"), person("Andrej-Nikolai", "Spiess", role = "ctb"),
person("Steve", "Horvath",email = "SHorvath@mednet.ucla.edu", role =
"ctb"), person("Peter", "Langfelder",email = "Peter.Langfelder@gmail.com",
role = "ctb"), person("skullkey", role = "ctb"), person("Mark",
"Van Der Loo", email = "mark.vanderloo@gmail.com", comment =
"https://github.com/markvanderloo d3dendrogram", role = "ctb"),
person("Andrie",
"de Vries", email = "apdevries@gmail.com", comment =
"ggdendro author", role = "ctb"),
person("Zuguang",
"Gu", email = "z.gu@dkfz-heidelberg.de", comment =
"circlize author", role = "ctb"),
person("Cath", comment =
"https://github.com/CathG", role = "ctb"), person("John",
"Ma", comment =
"https://github.com/JohnMCMa", role = "ctb"), person("Krzysiek",
"G", comment =
"https://github.com/storaged", role = "ctb"), person("Manuela",
"Hummel", email = "m.hummel@dkfz.de", comment =
"https://github.com/hummelma", role = "ctb"),
person("Chase",
"Clark", comment =
"https://github.com/chasemc", role = "ctb"),
person("Lucas",
"Graybuck", comment =
"https://github.com/hypercompetent", role = "ctb"),
person("jdetribol", comment =
"https://github.com/jdetribol", role = "ctb"),
person("Ben", "Ho", role = "ctb", email = "ben.ho@sickkids.ca", comment = "https://github.com/SplitInf"),
person("Samuel", "Perreault", role = "ctb", email = "samuel.perreault.3@ulaval.ca", comment = "https://github.com/samperochkin"),
person("Christian", "Hennig", role = "ctb", email = "c.hennig@ucl.ac.uk", comment = "http://www.homepages.ucl.ac.uk/~ucakche/"),
person("David", "Bradley", role = "ctb", comment = "https://github.com/DBradley27"),
person("Houyun", "Huang", role = "ctb", email = 'houyunhuang@163.com', comment = "https://github.com/houyunhuang"),
person("Patrick", "Schupp", role = "ctb", email = 'pschupp@sonic.net', comment = "https://github.com/pschupp"),
person("Alec", "Buetow", role = "ctb", email = 'alecbuetow@gmail.com', comment = "https://github.com/alecbuetow")
)
Description: Offers a set of functions for extending
'dendrogram' objects in R, letting you visualize and compare trees of
'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different 'dendrograms' to one another.
Depends:
R (>= 3.0.0)
Imports:
utils,
stats,
datasets,
magrittr (>= 1.0.1),
ggplot2,
viridis
Suggests:
knitr,
rmarkdown,
testthat,
seriation,
colorspace,
ape,
microbenchmark,
gplots,
heatmaply,
dynamicTreeCut,
pvclust,
corrplot,
DendSer,
MASS,
cluster,
fpc,
circlize (>= 0.2.5),
covr
Enhances: ggdendro,
dendroextras, Hmisc,
data.table, rpart,
WGCNA, moduleColor, distory, phangorn, zoo
VignetteBuilder: knitr
LazyData: true
License: GPL-2 | GPL-3
URL: https://talgalili.github.io/dendextend/,
https://github.com/talgalili/dendextend/,
https://cran.r-project.org/package=dendextend,
https://www.r-statistics.com/tag/dendextend/,
https://doi.org/10.1093/bioinformatics/btv428
BugReports: https://github.com/talgalili/dendextend/issues
RoxygenNote: 7.3.2
Encoding: UTF-8