Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

NOVOPlasty - The organelle assembler and heteroplasmy caller

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

A python and C++ library for reading and writing neuronal morphologies

Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

Mitochondrial Alteration Enrichment and Genome Analysis Toolkit

a tool for predicting mitochondrial DNA deletions using soft-clipping

Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

mitochondrial variant analysis tools

Module and script to remove contamination in assembled genomes before submission to ncbi

El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.

Stand-alone tool for methylation-based discrimination of mitochondrial DNA ONT reads

A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.

Deepred-Mt is a novel method based on deep neural networks to predict C-to-U editing sites in angiosperm mitochondrial RNA.

visualization of the human mitochondrial genome

EM segmentation of mitochondria from SNEMI3D data

MToolBox pipeline written in snakemake to allow a better scalability

Human Mitochondrial sequencing data Analysis Toolkit. Fetching information like variants, heteroplasmy/homoplasmy, etc. on mitochondrial genome from sequencing data

Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics