DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…

ARA.v1.6.0

De-novo Transcriptomics Assembly workflow for four Dictyostelium species (e.g.- Dictyostelium discoideum, Polysphondylium pallidum, Dictyostelium Lacteum and Dictyostelium Fasciculatum). This is the standard assembly workflow that should ideally work on any organism.Before normalizing first concatenate all RNAseq data across all samples into a s…

Enhancement the RNA simulator polyester to include polyA tails in the simulated sequences

counting Insertion (I), deletion (D), splcing(N) events from CIGAR string in sam file generated by STAR aligner

Python scripts necessary to reproduce ATAC-seq and RNA-seq analysis in Biotagging manuscript