RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Pipeline for low-level RNA-Seq data processing

Docker to run RSEM for transcript quantification

A pipeline for running rsem analysis on thousands of samples

A python package for working with inputs to and outputs from the toil-rnaseq pipeline

RNAseq STAR pipeplien chr22

RSEM task for RNA-seq workflow

Standard RNAseq analysis pipeline using snakemake.

RNASeq and Call Variants