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Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…
📊 A universal enrichment tool for interpreting omics data
🎄Visualization and annotation of phylogenetic trees
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
A repository for setting up a RNAseq workflow
Publication-ready volcano plots with enhanced colouring and labeling
PCAtools: everything Principal Components Analysis
🚥 Visualizing publication-quality multiple sequence alignment using ggplot2
An R package for creating publication-ready forest plots.
colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures
📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
Generating iToL annotations from Spreadsheet or CSV files
Genome wide orthology inference and dNdS estimation
dcHiC: Differential compartment analysis for Hi-C datasets
Scripts and data for Plotting in R for Biologists, a video course on YouTube
biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree