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135 stars written in R
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The Composer of ggplots

R 2,568 166 Updated Aug 25, 2025

Make Complex Heatmaps

R 1,432 241 Updated Jun 23, 2025

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

R 1,395 623 Updated May 31, 2023

📊 A universal enrichment tool for interpreting omics data

R 1,139 261 Updated Nov 1, 2025

Circular visualization in R

R 997 151 Updated Nov 11, 2023

🎄Visualization and annotation of phylogenetic trees

R 892 180 Updated Oct 30, 2025

A list of scRNA-seq analysis tools

R 752 166 Updated Oct 7, 2025

A grammar of graphics for comparative genomics

R 706 67 Updated Oct 31, 2025

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

R 479 223 Updated Jul 4, 2025

A repository for setting up a RNAseq workflow

R 445 183 Updated Apr 10, 2017

Publication-ready volcano plots with enhanced colouring and labeling

R 439 87 Updated Jun 12, 2024

PCAtools: everything Principal Components Analysis

R 364 74 Updated May 22, 2024

Analysis Pipeline for Single Cell ATAC-seq

R 320 132 Updated Apr 27, 2023

A 'ggplot2' implement of Venn Diagram.

R 309 45 Updated Sep 5, 2025

Genome data visualizations

R 220 64 Updated Oct 24, 2025
R 219 30 Updated Jan 24, 2025

🚥 Visualizing publication-quality multiple sequence alignment using ggplot2

R 215 25 Updated Nov 1, 2025

An R package for creating publication-ready forest plots.

R 162 24 Updated Feb 5, 2024

colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures

R 121 9 Updated Dec 6, 2024

📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/

R 110 14 Updated Oct 7, 2025

Generating iToL annotations from Spreadsheet or CSV files

R 106 41 Updated May 15, 2020

Get Silhouettes of Organisms from PhyloPic

R 96 13 Updated Oct 27, 2025

Genome wide orthology inference and dNdS estimation

R 96 29 Updated Sep 5, 2025

ggplot2 version of heatmap

R 90 12 Updated Mar 16, 2023

dcHiC: Differential compartment analysis for Hi-C datasets

R 73 11 Updated Jan 10, 2024

Scripts and data for Plotting in R for Biologists, a video course on YouTube

R 61 37 Updated Sep 10, 2020

biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute

R 57 4 Updated Nov 4, 2025

MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree

R 45 9 Updated Nov 21, 2019
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