#biological

  1. labage

    Biological aging clocks — multi-modal age estimation from blood, epigenetic, and proteomic data

    v0.1.0 #clock #biological #age #aging #estimation #blood #epigenetic #gold #panel #chronological
  2. biopath

    Shortest paths in biological overlap graphs with or without indexing

    v0.2.0 #shortest-path #graphs #biological #overlap #indexing
  3. jseqio

    Reading and writing biological sequences in FASTA or FASTQ format

    v0.1.7 #fasta-sequence #fastq #format #iterator #stream #compression #biological
  4. seqx

    A command-line tool for processing and analyzing biological sequences

    v0.1.2 #fasta #compression #processing #fastq #statistics #dedup #sequence-processing #low-memory #biological #tool-for-processing
  5. smafa

    Read aligner for small pre-aligned sequences

    v0.8.0 550 #sequence-alignment #aligner #pre-aligned #biological #biological-sequence
  6. omics-molecule

    Foundational representations of biological molecules in the Rust omics ecosystem

    v0.2.0 #molecule #omics #nucleotide #ecosystem #representation #biological #coordinate-system #dna #rna
  7. phago-cli

    Command-line interface for Phago biological computing framework

    v1.0.0 #command-line-interface #knowledge-graph #query #config-file #biological #explore #ingest #statistics
  8. peprs-core

    Core library for the PEP (Portable Encapsulated Projects) biological metadata specification

    v0.1.0 #pep #metadata #biological #sample #specification #encapsulated #python-bindings
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  10. mortalsim-simple-blood-flow

    MortalSim module for simple closed circulation flow of blood concentrations

    v0.1.0 #discrete-event-simulation #mortal-sim #discrete-events #blood #module #circulation #biological #concentrations
  11. mortalsim-human

    MortalSim Human

    v0.1.0 #discrete-event-simulation #mortal-sim #discrete-events #biological #human
  12. brrrr-lib

    About Tools to process biological sequences and annotations to modern file formats

    v0.14.0 #fasta #parquet #annotations #convert-json #biological #file-convert
  13. mortalsim-core

    MortalSim core simulation library

    v0.1.0 #simulation #events #biological #system #solution
  14. ecolysis_core

    An in-development package for ecological and biological simulation and analysis

    v0.0.1 #analysis #simulation-and-analysis #biological #interface #ecological #command-line-interface #in-development