Lib.rs

› Keywords #tsv #genes #scanpy #compression #10x #single-cell #barcode #mtx

#gz

  1. libz-rs-sys

    A memory-safe zlib implementation written in rust

    v0.6.3 2.6M #zlib #compression #debug-information #zlib-rs #level #gz #decompression #sense #memory-safe #debugging

  2. gsem

    Genomic Structural Equation Modeling from GWAS summary statistics

    v0.2.0 #snp #statistics #modeling #summary #equation #genomics #gwas #gz #tsv #ldsc

  3. gz

    Gazebo client library

    v0.10.0 #gazebo #robotics #simulation

  4. rsomics-vcf-roh

    Runs-of-homozygosity detector — Rust port of bcftools roh

    v0.1.0 #roh #detector #bcftools #vcf #af #bcf #allele-frequency #hidden-markov-model #gz

  5. tidyvcf

    command-line tool to convert VCF files to tab/comma separated tables

    v0.7.3 950 #csv #vcf #column #convert #comma-separated #command-line-tool #gz #field-name #vep #lenient

  6. ccdown

    A polite and user-friendly downloader for Common Crawl data

    v0.7.0 #downloader #warc #client #record #polite #gz #user-friendly #cc

  7. rsomics-bgzip

    Block-compress or decompress a file in BGZF — Rust port of htslib bgzip

    v0.1.0 #bgzf #htslib #block-compress #gz #bgzip #compression #eof #marker #libdeflate #canonical

  8. back_to_sequences

    Back to sequences: find the origin of kmers

    v0.8.3 #k-mer #fasta #shared #find #origin #fastq #gz #percentage #maximal

  9. ungoliant

    The pipeline for the OSCAR corpus

    v2.0.0 #corpus #pipeline #common-crawl #oscar #fasttext #gz #packaging

  10. rsomics-sc-hvg-cellranger

    Highly-variable-gene selection (cell_ranger flavor) from a 10x matrix — scanpy highly_variable_genes-compatible

    v0.1.0 #genes #variables #rsomics #scanpy #10x #mad #gz #tsv #dispersion #ranger

  11. rsomics-sc-filter

    Filter cells and genes of a 10x single-cell count matrix by count/expression thresholds (scanpy filter_cells + filter_genes compatible)

    v0.1.0 #genes #single-cell #filter-cells #count #threshold #10x #gz #tsv #barcode #mtx

  12. rsomics-sc-qc-metrics

    Per-cell and per-gene QC metrics from a 10x single-cell count matrix — Rust port of scanpy calculate_qc_metrics

    v0.1.0 #per-cell #metrics #genes #single-cell #tsv #qc #scanpy #10x #barcode #gz

  13. rsomics-sc-pseudobulk

    Pseudobulk aggregation of a single-cell count matrix — sum or mean counts per group, matching scanpy sc.get.aggregate

    v0.1.0 #single-cell #aggregation #matrix #genes #groups #scanpy #barcode #tsv #gz #mtx

  14. gzbox

    gz 的工具箱

    v1.5.26 3.1K #gz #macro-println-vars #chrono #colorize #pinyin #walk-dir

  15. rsomics-sc-hvg

    Highly-variable-gene selection from a single-cell count matrix — scanpy seurat-flavor compatible

    v0.1.0 #genes #scanpy #single-cell #variables #column #10x #gz #tsv #variance #mtx

  16. rsomics-sc-score-genes

    Gene-set score per cell (mean of a gene list minus an expression-bin-matched random control set) — matches scanpy tl.score_genes(random_state=0) value-exactly

    v0.1.0 #genes #per-cell #score #random #control #minus #scanpy #gene-expression #gz #tsv

  17. singlefile-formats

    Default file format implementations for singlefile

    v0.5.0 #compression #file-format #serde-json #singlefile #toml #deflate #bincode #xz #gz #bzip

  18. fastxgz

    A fasta/fastq parser for both compressed and not compressed files

    v0.4.0 #fastq #fasta #compression #gz #k-mer #fastx #hash

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  19. wasm_gz

    esm modules for gzip compression and/or decompression, with sync and async (worker) versions

    v0.7.0 #gzip #gz #zopfli #gunzip #wasm

  20. gz_lib

    gz 的工具箱

    v0.1.1 #gz #lib #的工具箱

  21. unwalk

    Walk directory recursively to un-gzip files

    v0.2.0-beta1 #gzip #gz #unzip

  22. quartz_nbt_macros

    contains the function-like procedural macro which parses quartz_nbt's compact compound format

    v0.1.1 3.6K #proc-macro #format #compound #quartz-nbt #zlib #function-like #minecraft #minecraft-nbt #gz #vice

  23. unwalk-gz

    un-gzip feature for unwalk

    v0.2.0-beta1 #unwalk #gz #action #un-gzip #compression #command-line-arguments

  24. unwalk-base

    modular features for unwalk

    v0.2.0-beta1 #unwalk #action #gz #modular #perform #un-gzip #command-line-arguments #walk-dir

  25. archive-lp

    easy interaction with multiple archive formats

    v0.2.3 #tar-archive #zip #tar-gz #gz #xz #tar-xz