| The metric geometry of the manifold of Riemannian metrics over a closed manifold B Clarke Calculus of Variations and Partial Differential Equations 39 (3), 533-545, 2010 | 65 | 2010 |
| Cell2fate infers RNA velocity modules to improve cell fate prediction A Aivazidis, F Memi, V Kleshchevnikov, S Er, B Clarke, O Stegle, ... Nature methods 22 (4), 698-707, 2025 | 40 | 2025 |
| Integration of variant annotations using deep set networks boosts rare variant association testing B Clarke, E Holtkamp, H Öztürk, M Mück, M Wahlberg, K Meyer, ... Nature Genetics 56 (10), 2271-2280, 2024 | 40 | 2024 |
| The completion of the manifold of Riemannian metrics B Clarke Journal of Differential Geometry 93 (2), 203-268, 2013 | 32 | 2013 |
| Bicycle: Intervention-based causal discovery with cycles M Rohbeck, B Clarke, K Mikulik, A Pettet, O Stegle, K Ueltzhöffer Causal Learning and Reasoning, 209-242, 2024 | 31 | 2024 |
| Ricci flow and the metric completion of the space of Kähler metrics B Clarke, YA Rubinstein American Journal of Mathematics 135 (6), 1477-1505, 2013 | 30 | 2013 |
| Predicting functional constraints across evolutionary timescales with phylogeny-informed genomic language models C Ye, G Benegas, C Albors, JC Li, S Prillo, PD Fields, B Clarke, YS Song BioRxiv, 2025 | 24 | 2025 |
| Geodesics, distance, and the CAT (0) property for the manifold of Riemannian metrics B Clarke Mathematische Zeitschrift 273 (1), 55-93, 2013 | 24 | 2013 |
| The Completion of the Manifold of Riemannian Metrics with Respect to its Metric B Clarke arXiv preprint arXiv:0904.0159, 2009 | 19 | 2009 |
| Conformal deformations of the Ebin metric and a generalized Calabi metric on the space of Riemannian metrics B Clarke, YA Rubinstein Annales de l'Institut Henri Poincaré C 30 (2), 251-274, 2013 | 16 | 2013 |
| Model-based inference of RNA velocity modules improves cell fate prediction A Aivazidis, F Memi, V Kleshchevnikov, B Clarke, O Stegle, OA Bayraktar bioRxiv, 2023.08. 03.551650, 2023 | 15 | 2023 |
| The Riemannian L2 topology on the manifold of Riemannian metrics B Clarke Annals of Global Analysis and Geometry 39 (2), 131-163, 2011 | 15 | 2011 |
| The completion of the manifold of Riemannian metrics B Clarke arXiv preprint arXiv:0904.0177, 2009 | 9 | 2009 |
| Decompositions of the tensor products of irreducible sl (2)-modules in characteristic 3 B Clarke arXiv preprint arXiv:0809.3672, 2008 | 4 | 2008 |
| Mapping trans-eQTLs at single-cell resolution using Latent Interaction Variational Inference D Vagiaki, T Heinen, M Saraswat, B Clarke, O Stegle bioRxiv, 2026.02. 04.703363, 2026 | 3 | 2026 |
| Integration of variant annotations using deep set networks boosts rare variant association genetics B Clarke, E Holtkamp, H Öztürk, M Mück, M Wahlberg, K Meyer, ... bioRxiv, 2023.07. 12.548506, 2023 | 2 | 2023 |
| Multimodal phenotyping defines variant-to-function maps for RBM20 in dilated cardiomyopathy K Fenzl, LH Mueller, J Kornienko, M Majchrowska, N Eikmeier, B Wehnert, ... bioRxiv, 2026.06. 10.730167, 2026 | 1 | 2026 |
| Scalar curvature along Ebin geodesics C Böhm, T Buttsworth, B Clarke Journal für die reine und angewandte Mathematik (Crelles Journal) 2024 (813 …, 2024 | 1 | 2024 |
| Gaussian measures on the of space of Riemannian metrics B Clarke, D Jakobson, N Kamran, L Silberman, J Taylor Annales mathématiques du Québec 39 (2), 129-145, 2015 | 1 | 2015 |
| Predicting genome-wide functional constraints with GPN-Star C Ye, G Benegas, C Albors, JC Li, S Prillo, PD Fields, B Clarke, YS Song Nature, 1-10, 2026 | | 2026 |
