| Proteins' knotty problems AI Jarmolinska, AP Perlinska, R Runkel, B Trefz, HM Ginn, P Virnau, ... Journal of molecular biology 431 (2), 244-257, 2019 | 51 | 2019 |
| LinkProt: a database collecting information about biological links P Dabrowski-Tumanski, AI Jarmolinska, W Niemyska, EJ Rawdon, ... Nucleic acids research, gkw976, 2016 | 49 | 2016 |
| Prediction of the optimal set of contacts to fold the smallest knotted protein P Dabrowski-Tumanski, AI Jarmolinska, JI Sulkowska Journal of Physics: Condensed Matter 27 (35), 354109, 2015 | 30 | 2015 |
| PconsFam: an interactive database of structure predictions of Pfam families J Lamb, AI Jarmolinska, M Michel, D Menéndez-Hurtado, JI Sulkowska, ... Journal of molecular biology 431 (13), 2442-2448, 2019 | 16 | 2019 |
| GapRepairer: a server to model a structural gap and validate it using topological analysis AI Jarmolinska, M Kadlof, P Dabrowski-Tumanski, JI Sulkowska Bioinformatics 34 (19), 3300-3307, 2018 | 15 | 2018 |
| KnotGenome: a server to analyze entanglements of chromosomes JI Sulkowska, S Niewieczerzal, AI Jarmolinska, JT Siebert, P Virnau, ... Nucleic acids research 46 (W1), W17-W24, 2018 | 12 | 2018 |
| Knot_pull—python package for biopolymer smoothing and knot detection AI Jarmolinska, A Gambin, JI Sulkowska Bioinformatics 36 (3), 953-955, 2020 | 11 | 2020 |
| DCA-MOL: a PyMOL plugin to analyze direct evolutionary couplings AI Jarmolinska, Q Zhou, JI Sulkowska, F Morcos Journal of Chemical Information and Modeling 59 (2), 625-629, 2019 | 11 | 2019 |
| Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor V Zayats, AP Perlinska, AI Jarmolinska, B Jastrzebski, S Dunin-Horkawicz, ... PLoS computational biology 17 (10), e1009502, 2021 | 7 | 2021 |
| AlphaKnot 2.0: a web server for the visualization of proteins’ knotting and a database of knotted AlphaFold-predicted models P Rubach, M Sikora, AI Jarmolinska, AP Perlinska, JI Sulkowska Nucleic Acids Research, gkae443, 2024 | 1 | 2024 |
| Algorithms and models for protein structure analysis AI Jarmolińska | 1 | 2019 |
| Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor J Sulkowska, V Zayats, A Jarmolinska, AP Nska, B Jastrzebski, ... PROTEIN SCIENCE 30, 148-148, 2021 | | 2021 |
| DCA-MOL: A PyMOL Plugin To Analyze Direct Evolutionary Couplings F Morcos, AI Jarmolinska, Q Zhou, J Sułkowska Journal of Chemical Information and Modeling, 2019 | | 2019 |
| Mysteries of entanglement-from a single protein to a pair of chromosomes JI Sulkowska, P Dabrowski-Tumanski, AP Perlinska, W Niemyska, ... Acta Biochimica Polonica 65 (S2), 2018 | | 2018 |
| Co-author’s statement AI Jarmolinska Impact of the knotted motif on protein structure and function, 0 | | |
| Would evolution stop membrane proteins from knotting? AI Jarmolinska, P Virnau, JI Sulkowska 3rd EMBO Workshop on Computational and Structural Biology, 0 | | |