| Deep learning-based approaches for multi-omics data integration and analysis JL Ballard, Z Wang, W Li, L Shen, Q Long BioData Mining 17 (1), 38, 2024 | 214 | 2024 |
| Distance-weighted Sinkhorn loss for Alzheimer’s disease classification Z Wang, Q Zhan, B Tong, S Yang, B Hou, H Huang, AJ Saykin, ... Iscience 27 (3), 2024 | 8 | 2024 |
| QOT: Quantized Optimal Transport for sample-level distance matrix in single-cell omics Z Wang, Q Zhan, S Yang, S Mu, J Chen, S Garai, P Orzechowski, ... Briefings in Bioinformatics 26 (1), bbae713, 2025 | 5* | 2025 |
| Using optimal transport to improve spherical harmonic quantification of complex biological shapes Z Wang, W Yang, K Ryan, S Garai, BM Auerbach, L Shen 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | 5 | 2022 |
| Optimal transport reveals immune perturbation and fingerprints over time in COVID-19 vaccination Z Wang, J Chen, M Ionita, Q Zhan, Z Zhou, L Shen Experimental Biology and Medicine 250, 10445, 2025 | 2 | 2025 |
| Fair CCA for Fair Representation Learning: An ADNI Study B Hou, Z Wang, Z Zhou, B Tong, Z Wang, J Bao, D Duong-Tran, Q Long, ... Proceedings of the 16th ACM International Conference on Bioinformatics …, 2025 | 1 | 2025 |
| Multi-Scale Geometric Autoencoder Q Zhan, Z Zhou, Z Wang, L Shen arXiv preprint arXiv:2509.24168, 2025 | 1 | 2025 |
| Bi-Lipschitz Autoencoder With Injectivity Guarantee Q Zhan, Z Zhou, Z Wang, Q Long, L Shen arXiv preprint arXiv:2604.06701, 2026 | | 2026 |
| Staging and Pseudotime Inference of Alzheimer's Disease Progression AA Nair, Z Wen, Z Wang, J Yan, AJ Saykin, H Huang, PM Thompson, ... Alzheimer's & Dementia 21, e098857, 2025 | | 2025 |
| SLR: A Modified Logistic Regression Model with Sinkhorn Divergence for Alzheimer’s Disease Classification Q Zhan, Z Zhou, Z Wen, Z Wang, B Tong, H Huang, AJ Saykin, ... AMIA Summits on Translational Science Proceedings 2025, 634, 2025 | | 2025 |
| An Interpretable Graph-Regularized Optimal Transport Framework for Diagonal Single-Cell Integrative Analysis Z Wang, Q Zhan, S Yang, Z Zhou, M Kan, T Zhai, L Shen bioRxiv, 2024.10. 30.621072, 2024 | | 2024 |
| Shape analysis of amygdala atrophy using SPHARM-OT Z Wang, J Chen, W Yang, S Gara, FH Xu, J Wen, C Davatzikos, L Shen Medical Imaging 2023: Image Processing 12464, 24-33, 2023 | | 2023 |