| Deep evidential regression A Amini, W Schwarting, A Soleimany, D Rus Advances in Neural Information Processing Systems (NeurIPS) 33, 2020 | 507 | 2020 |
| Renal clearable catalytic gold nanoclusters for in vivo disease monitoring CN Loynachan*, AP Soleimany*, JS Dudani, Y Lin, A Najer, A Bekdemir, ... Nature Nanotechnology, 1-8, 2019 | 412 | 2019 |
| Synthetic recombinase-based state machines in living cells N Roquet, AP Soleimany, AC Ferris, S Aaronson, TK Lu Science 353 (6297), aad8559, 2016 | 280 | 2016 |
| Uncovering and mitigating algorithmic bias through learned latent structure A Amini*, AP Soleimany*, W Schwarting, SN Bhatia, D Rus AAAI/ACM Conference on Artificial Intelligence, Ethics, and Society, 2019 | 269 | 2019 |
| Evidential deep learning for guided molecular property prediction and discovery AP Soleimany*, A Amini*, S Goldman*, D Rus, SN Bhatia, CW Coley ACS Central Science 7 (8), 1356-1367, 2021 | 161 | 2021 |
| Protein structure generation via folding diffusion KE Wu, KK Yang, R van den Berg, S Alamdari, JY Zou, AX Lu, AP Amini Nature Communications 15 (1), 1059, 2024 | 158 | 2024 |
| Synthetic and living micropropellers for convection-enhanced nanoparticle transport S Schuerle, AP Soleimany, T Yeh, GM Anand, M Häberli, HE Fleming, ... Science Advances 5 (4), eaav4803, 2019 | 138 | 2019 |
| Activity-based diagnostics: an emerging paradigm for disease detection and monitoring AP Soleimany, SN Bhatia Trends in Molecular Medicine 26 (5), 450-468, 2020 | 70 | 2020 |
| Urinary detection of lung cancer in mice via noninvasive pulmonary protease profiling JD Kirkpatrick*, AD Warren*, AP Soleimany*, PMK Westcott, JC Voog, ... Science Translational Medicine 12 (537), 2020 | 67 | 2020 |
| Introduction to Deep Learning: MIT 6.S191 A Amini, A Soleimany MIT, 2018 | 66* | 2018 |
| Protein generation with evolutionary diffusion: sequence is all you need S Alamdari, N Thakkar, R van den Berg, N Tenenholtz, B Strome, ... BioRxiv, 2023.09. 11.556673, 2023 | 65 | 2023 |
| Spatial uncertainty sampling for end-to-end control A Amini, A Soleimany, S Karaman, D Rus Neural Information Processing Systems (NeurIPS), 2017 | 62 | 2017 |
| Pharmacokinetic tuning of protein–antigen fusions enhances the immunogenicity of T-cell vaccines NK Mehta, RV Pradhan, AP Soleimany, KD Moynihan, AM Rothschilds, ... Nature Biomedical Engineering, 1-13, 2020 | 60 | 2020 |
| Low protease activity in B cell follicles promotes retention of intact antigens after immunization A Aung, A Cui, L Maiorino, AP Amini, JR Gregory, M Bukenya, Y Zhang, ... Science 379 (6630), eabn8934, 2023 | 54 | 2023 |
| Priming agents transiently reduce the clearance of cell-free DNA to improve liquid biopsies C Martin-Alonso, S Tabrizi, K Xiong, T Blewett, S Sridhar, A Crnjac, ... Science 383 (6680), eadf2341, 2024 | 47 | 2024 |
| Multiscale profiling of protease activity in cancer AP Amini, JD Kirkpatrick, CS Wang, AM Jaeger, S Su, S Naranjo, Q Zhong, ... Nature Communications 13 (1), 5745, 2022 | 28* | 2022 |
| Feature reuse and scaling: Understanding transfer learning with protein language models FZ Li, AP Amini, Y Yue, KK Yang, AX Lu Forty-first International Conference on Machine Learning 41, 2024 | 26* | 2024 |
| Assessing the limits of zero-shot foundation models in single-cell biology KZ Kedzierska, L Crawford, AP Amini, AX Lu bioRxiv, 2023.10. 16.561085, 2023 | 25 | 2023 |
| Genetic encoding of targeted MRI contrast agents for tumor imaging S Schuerle, M Furubayashi, AP Soleimany, T Gwisai, W Huang, CA Voigt, ... ACS Synthetic Biology, 2020 | 21 | 2020 |
| Activatable zymography probes enable in situ localization of protease dysregulation in cancer AP Soleimany*, JD Kirkpatrick*, S Su, JS Dudani, Q Zhong, A Bekdemir, ... Cancer Research 81 (1), 213-224, 2021 | 18 | 2021 |
Sangeeta N. BhatiaJohn J. and Dorothy Wilson Professor of Health Sciences and Technology and Electrical Engineering and Computer Science, Massachusetts Institute of TechnologyVerified email at mit.edu
Daniela RusAndrew (1956) and Erna Viterbi Professor of Computer Science, MITVerified email at csail.mit.edu
Kevin K. YangMicrosoft ResearchVerified email at microsoft.com
Alex LuMicrosoft ResearchVerified email at microsoft.com
Molly StevensProfessor of Biomedical Materials and Regenerative Medicine and the Research Director for Biomedical Material Sciences Verified email at imperial.ac.uk
Timothy LuMassachusetts Institute of TechnologyVerified email at mit.edu
Lorin CrawfordMicrosoft ResearchVerified email at microsoft.com
Simone SchuerleETH ZurichVerified email at hest.ethz.ch
Nicolò FusiPartner Researcher, Microsoft ResearchVerified email at microsoft.com
Alexander AminiComputer Science, Massachusetts Institute of TechnologyVerified email at mit.edu
