Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ... Molecular systems biology 17 (3), e9923, 2021 | 248 | 2021 |
Robust and efficient parameter estimation in dynamic models of biological systems A Gábor, JR Banga BMC systems biology 9, 1-25, 2015 | 190 | 2015 |
AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology E Balsa-Canto, D Henriques, A Gábor, JR Banga Bioinformatics 32 (21), 3357-3359, 2016 | 162 | 2016 |
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems A Gábor, AF Villaverde, JR Banga BMC systems biology 11, 1-16, 2017 | 140 | 2017 |
Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses A Dugourd, C Kuppe, M Sciacovelli, E Gjerga, A Gabor, KB Emdal, ... Molecular Systems Biology 17 (1), e9730, 2021 | 133 | 2021 |
Explainable multiview framework for dissecting spatial relationships from highly multiplexed data J Tanevski, ROR Flores, A Gabor, D Schapiro, J Saez-Rodriguez Genome biology 23 (1), 97, 2022 | 126 | 2022 |
Analysis of the human kinome and phosphatome by mass cytometry reveals overexpression-induced effects on cancer-related signaling XK Lun, D Szklarczyk, A Gábor, N Dobberstein, VRT Zanotelli, ... Molecular cell 74 (5), 1086-1102. e5, 2019 | 44 | 2019 |
New insights into the mechanisms underlying 5-fluorouracil-induced intestinal toxicity based on transcriptomic and metabolomic responses in human intestinal organoids D Rodrigues, T de Souza, L Coyle, M Di Piazza, B Herpers, S Ferreira, ... Archives of Toxicology 95, 2691-2718, 2021 | 39 | 2021 |
Deciphering the signaling network of breast cancer improves drug sensitivity prediction M Tognetti, A Gabor, M Yang, V Cappelletti, J Windhager, OM Rueda, ... Cell Systems 12 (5), 401-418. e12, 2021 | 39 | 2021 |
Modeling and identification of a nuclear reactor with temperature effects and xenon poisoning A Gábor, C Fazekas, G Szederkényi, KM Hangos European journal of control 17 (1), 104-115, 2011 | 38 | 2011 |
Bringing data from curated pathway resources to Cytoscape with OmniPath F Ceccarelli, D Turei, A Gabor, J Saez-Rodriguez Bioinformatics 36 (8), 2632-2633, 2020 | 37 | 2020 |
Integration of temporal single cell cellular stress response activity with logic-ODE modeling reveals activation of ATF4-CHOP axis as a critical predictor of drug-induced liver … LS Wijaya, P Trairatphisan, A Gabor, M Niemeijer, J Keet, AA Morera, ... Biochemical Pharmacology 190, 114591, 2021 | 26 | 2021 |
Converting networks to predictive logic models from perturbation signalling data with CellNOpt E Gjerga, P Trairatphisan, A Gabor, H Koch, C Chevalier, F Ceccarelli, ... Bioinformatics 36 (16), 4523-4524, 2020 | 26 | 2020 |
Model complexity reduction of chemical reaction networks using mixed-integer quadratic programming R Hannemann-Tamás, A Gabor, G Szederkenyi, KM Hangos Computers & Mathematics with Applications 65 (10), 1575-1595, 2013 | 23 | 2013 |
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data J Tanevski, T Nguyen, B Truong, N Karaiskos, ME Ahsen, X Zhang, C Shu, ... Life Science Alliance 3 (11), 2020 | 19 | 2020 |
Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd A Gabor, M Tognetti, A Driessen, J Tanevski, B Guo, W Cao, H Shen, T Yu, ... Molecular systems biology 17 (10), e10402, 2021 | 17 | 2021 |
Reaction network realizations of rational biochemical systems and their structural properties A Gábor, KM Hangos, JR Banga, G Szederkényi Journal of Mathematical Chemistry 53, 1657-1686, 2015 | 16 | 2015 |
Model reduction in bio-chemical reaction networks with Michaelis-Menten kinetics KM Hangos, A Gábor, G Szederkényi 2013 European Control Conference (ECC), 4478-4483, 2013 | 15 | 2013 |
Parallel ant colony optimization for the training of cell signaling networks P González, R Prado-Rodriguez, A Gábor, J Saez-Rodriguez, JR Banga, ... Expert Systems with Applications 208, 118199, 2022 | 12 | 2022 |
Improved parameter estimation in kinetic models: selection and tuning of regularization methods A Gábor, JR Banga Computational Methods in Systems Biology: 12th International Conference …, 2014 | 11 | 2014 |