[HTML][HTML] OpenGDC: unifying, modeling, integrating cancer genomic data and clinical metadata
… novel software system, OpenGDC, for the … OpenGDC version already produced using our
software system. Section 4 shows examples of querying and processing of the new OpenGDC …
software system. Section 4 shows examples of querying and processing of the new OpenGDC …
[CITATION][C] OpenGDC: standardizing, extending, and integrating genomics data of cancer
OpenGDC: standardizing, extending, and integrating genomics data of cancer … OpenGDC:
standardizing, extending, and integrating genomics data of cancer …
standardizing, extending, and integrating genomics data of cancer …
Smart persistence and accessibility of genomic and clinical data
… In this work, we consider data from the OpenGDC repository that is constantly synchronized
… free-BED standardized data from the OpenGDC public FTP repository and we model them to …
… free-BED standardized data from the OpenGDC public FTP repository and we model them to …
Snapshot of the Data Repository
A Bernasconi - Model, Integrate, Search... Repeat: A Sound Approach …, 2023 - Springer
… In case an OpenGDC data file corresponds tonoriginal GDC files (eg, OpenGDC gene …
Then, in the final OpenGDC metadata file, we group the information from the original files (…
Then, in the final OpenGDC metadata file, we group the information from the original files (…
Big biomedical data modeling for knowledge extraction with machine learning techniques
E Cappelli - 2020 - arcadia.sba.uniroma3.it
… The main results of the dissertation are new software tools and methods: i) OpenGDC,
which … We applied the OpenGDC to TCGA program and created the OpenGDC repository de…
which … We applied the OpenGDC to TCGA program and created the OpenGDC repository de…
Low temperature solid oxide fuel cells with hierarchically porous cathode nano-network
… The straight open GDC cathode skeleton and NiO–GDC anode substrate prepared by
freeze-drying tape-casting facilitate mass transport while the nano cathode catalyst promotes the …
freeze-drying tape-casting facilitate mass transport while the nano cathode catalyst promotes the …
Operando observation of patterned nickel-gadolinium doped ceria solid oxide fuel cell anode
Nickel (Ni) - gadolinium doped ceria (GDC) is one of the promising anode materials for solid
oxide fuel cells (SOFCs). However, they are not as stable as Ni - yttria-stabilized zirconia (…
oxide fuel cells (SOFCs). However, they are not as stable as Ni - yttria-stabilized zirconia (…
Characterizing and evaluating cell specialization through Gini index of gene expression: TCGA normal vs tumor case study
… In this study, we focus on 17 out of 33 different tumor types available in the OpenGDC
database considering a number of paired normal-tumor samples ranging from a minimum of 9 (…
database considering a number of paired normal-tumor samples ranging from a minimum of 9 (…
Extending Knowledge on Genomic Data and Metadata of Cancer by Exploiting Taxonomy-Based Relaxed Queries on Domain-Specific Ontologies
… The data were originally retrieved from OpenGDC [1], which provides an easy access to
experimental data and metadata of different research programs about cancer-related studies …
experimental data and metadata of different research programs about cancer-related studies …
[HTML][HTML] An updated overview of existing cancer databases and identified needs
… OpenGDC, derived from the GDC, expands upon the existing platform by incorporating the
… OpenGDC enhances the efficiency of accessing genomic and clinical data while expanding …
… OpenGDC enhances the efficiency of accessing genomic and clinical data while expanding …