A primer on metagenomics
JC Wooley, A Godzik, I Friedberg - PLoS computational biology, 2010 - journals.plos.org
… various levels of metagenomic annotation. … metagenome size and the handling of associated
metadata. Finally, we will review some studies highlighting the advantages of metagenomic-…
metadata. Finally, we will review some studies highlighting the advantages of metagenomic-…
A primer on metagenomics and next‐generation sequencing in fish gut microbiome research
… of and prospects of metagenomics and amplicon and … First of all, the construction and screening
of metagenomic libraries … functional metagenomics, the sequence-based metagenomics …
of metagenomic libraries … functional metagenomics, the sequence-based metagenomics …
Better primer design for metagenomics applications by increasing taxonomic distinguishability
M Jaric, J Segal, E Silva-Herzog, L Schneper… - BMC proceedings, 2013 - Springer
Current methods of understanding microbiome composition and structure rely on accurately
estimating the number of distinct species and their relative abundance. Most of these …
estimating the number of distinct species and their relative abundance. Most of these …
Viral metagenomics
EL Delwart - Reviews in medical virology, 2007 - Wiley Online Library
… In the recent metagenomic studies viral particles from … Metagenomic approaches to viral
characterisation have … Viral metagenomic approaches provide novel opportunities to generate …
characterisation have … Viral metagenomic approaches provide novel opportunities to generate …
Coverage evaluation of universal bacterial primers using the metagenomic datasets
… Additionally, most studies do not account for the positional effect of single primer-template
mismatches. In this study, we used 7 metagenomic datasets as well as the Ribosomal …
mismatches. In this study, we used 7 metagenomic datasets as well as the Ribosomal …
MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool
… Because metagenomic and metatranscriptomic sequences are generated … metagenome
datasets to evaluate universal primers for the bacterial 16S rRNA gene and found that primer …
datasets to evaluate universal primers for the bacterial 16S rRNA gene and found that primer …
Beyond research: a primer for considerations on using viral metagenomics in the field and clinic
Powered by recent advances in next-generation sequencing technologies, metagenomics
has already unveiled vast microbial biodiversity in a range of environments, and is …
has already unveiled vast microbial biodiversity in a range of environments, and is …
A bioinformatician's guide to metagenomics
V Kunin, A Copeland, A Lapidus… - Microbiology and …, 2008 - Am Soc Microbiol
… For the purposes of this review, we define metagenomics as the application of shotgun
sequencing to DNA obtained directly from an environmental sample or series of related samples, …
sequencing to DNA obtained directly from an environmental sample or series of related samples, …
Metagenomics-a guide from sampling to data analysis
… metagenomics, with particular emphasis on the steps involved in a typical sequence-based
metagenome … Clearly, any kind of metagenomic dataset will benefit from the rich information …
metagenome … Clearly, any kind of metagenomic dataset will benefit from the rich information …
The impact of primer design on amplicon-based metagenomic profiling accuracy: detailed insights into bifidobacterial community structure
… metagenomic primers. In detail, PP39 (Probio_Uni/Probio_Rev), PP41 (341F/534R), and
PP72 (970F/1050R) were the most suitable primer … A total of 75 primer pairs were included in …
PP72 (970F/1050R) were the most suitable primer … A total of 75 primer pairs were included in …