User profiles for Chih-Hao Lu

Chih-Hao Lu

Postdoctoral scholar, UCSF; PhD in Chemistry, Stanford University; MS and BS, NTU …
Verified email at ucsf.edu
Cited by 209

Prediction of protein subcellular localization

CS Yu, YC Chen, CH Lu… - … : Structure, Function, and …, 2006 - Wiley Online Library
Because the protein's function is usually related to its subcellular localization, the ability to
predict subcellular localization directly from protein sequences will be useful for inferring …

Prediction of metal ion–binding sites in proteins using the fragment transformation method

CH Lu, YF Lin, JJ Lin, CS Yu - PloS one, 2012 - journals.plos.org
The structure of a protein determines its function and its interactions with other factors.
Regions of proteins that interact with ligands, substrates, and/or other proteins, tend to be …

MIB: metal ion-binding site prediction and docking server

…, CS Shih, JK Hwang, CS Yu, CH Lu - Journal of chemical …, 2016 - ACS Publications
The structure of a protein determines its biological function(s) and its interactions with other
factors; the binding regions tend to be conserved in sequence and structure, and the …

MIB2: metal ion-binding site prediction and modeling server

CH Lu, CC Chen, CS Yu, YY Liu, JJ Liu, ST Wei… - …, 2022 - academic.oup.com
Motivation MIB2 (metal ion-binding) attempts to overcome the limitation of structure-based
prediction approaches, with many proteins lacking a solved structure. MIB2 also offers more …

Deriving protein dynamical properties from weighted protein contact number

…, YL Lai, SC Yen, CH Shih, CH Lu… - Proteins: Structure …, 2008 - Wiley Online Library
It has recently been shown that in proteins the atomic mean‐square displacement (or B‐factor)
can be related to the number of the neighboring atoms (or protein contact number), and …

CELLO2GO: a web server for protein subCELlular LOcalization prediction with functional gene ontology annotation

…, WC Su, KC Chang, SW Huang, JK Hwang, CH Lu - PloS one, 2014 - journals.plos.org
CELLO2GO ( http://cello.life.nctu.edu.tw/cello2go/ ) is a publicly available, web-based system
for screening various properties of a targeted protein and its subcellular localization. Herein…

Curved adhesions mediate cell attachment to soft matrix fibres in three dimensions

W Zhang, CH Lu, ML Nakamoto, CT Tsai, AR Roy… - Nature Cell …, 2023 - nature.com
Integrin-mediated focal adhesions are the primary architectures that transmit forces between
the extracellular matrix (ECM) and the actin cytoskeleton. Although focal adhesions are …

Thrombospondin 2 promotes tumor metastasis by inducing matrix metalloproteinase-13 production in lung cancer cells

…, CH Tang, PC Chen, LW Lin, CY Lin, CH Lu… - Biochemical …, 2018 - Elsevier
Thrombospondin (TSP)-2, a matricellular glycoprotein of the TSP family, regulates multiple
biological functions, including proliferation, angiogenesis, cell adhesion, and extracellular …

Involvement of M1 macrophage polarization in endosomal toll‐like receptors activated psoriatic inflammation

CH Lu, CY Lai, DW Yeh, YL Liu, YW Su… - Mediators of …, 2018 - Wiley Online Library
Psoriasis is a chronic inflammatory skin disorder that affects ~2%–3% of the worldwide
population. Inappropriate and excessive activation of endosomal Toll‐like receptors 7, 8, and 9 (…

USP17 mediates macrophage-promoted inflammation and stemness in lung cancer cells by regulating TRAF2/TRAF3 complex formation

CH Lu, DW Yeh, CY Lai, YL Liu, LR Huang, AYL Lee… - Oncogene, 2018 - nature.com
Macrophage accumulation and inflammation in the lung owing to stresses and diseases is a
cause of lung cancer development. However, molecular mechanisms underlying the …