SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
SEA VIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers dedicated
to sequence alignment and molecular phylogenetics. SEA VIEW is a sequence alignment …
to sequence alignment and molecular phylogenetics. SEA VIEW is a sequence alignment …
Codon usage in bacteria: correlation with gene expressivity
M Gouy, C Gautier - Nucleic acids research, 1982 - academic.oup.com
The nucleic acid sequence band now contains over 600 protein coding genes of which 107
are from prokaryotic organisms. Codon frequencies in each new prokaryotic gene are given. …
are from prokaryotic organisms. Codon frequencies in each new prokaryotic gene are given. …
Codon catalog usage is a genome strategy modulated for gene expressivity
R Grantham, C Gautier, M Gouy… - Nucleic acids …, 1981 - academic.oup.com
The nucleic acid sequence bank now contains 161 mRNAs, 43 new genes are added. One
sequence, that of B. mori, fibroin, is dropped due to uncertainty on the starting point for …
sequence, that of B. mori, fibroin, is dropped due to uncertainty on the starting point for …
Codon catalog usage and the genome hypothesis
R Grantham, C Gautier, M Gouy, R Mercier… - Nucleic acids …, 1980 - academic.oup.com
Frequencies for each of the 61 amino acid codes have been determined in every published
mRNA sequence of 50 or more codons. The frequencies are shown for each kind of genome …
mRNA sequence of 50 or more codons. The frequencies are shown for each kind of genome …
Codon frequencies in 119 individual genes confirm corsistent choices of degenerate bases according to genome type
R Grantham, C Gautier, M Gouy - Nucleic acids research, 1980 - academic.oup.com
The poor printing of our previous Figure 2 (1) is corrected. Codon usage in mRNA
sequences just published is also given. A new correspondence analysis is done, based on …
sequences just published is also given. A new correspondence analysis is done, based on …
Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes
JR Lobry, C Gautier - Nucleic acids research, 1994 - academic.oup.com
Multivariate analysis of the amino-acid compositions of 999 chromosome-encoded proteins
from Escherichia coli showed that three main factors influence the variability of amino-acid …
from Escherichia coli showed that three main factors influence the variability of amino-acid …
The distribution of genes in the human genome
Previous investigations on the human genome determined: (i) the base compositions (GC
levels) and the relative amounts of its isochore families; (ii)the compositional correlations (ie, …
levels) and the relative amounts of its isochore families; (ii)the compositional correlations (ie, …
Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores
L Duret, D Mouchiroud, C Gautier - Journal of molecular evolution, 1995 - Springer
We compared the exon/intron organization of vertebrate genes belonging to different isochore
classes, as predicted by their GC content at third codon position. Two main features have …
classes, as predicted by their GC content at third codon position. Two main features have …
VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus–host interaction networks
…, L Meyniel, S Delmotte, C Gautier… - Nucleic acids …, 2009 - academic.oup.com
Infectious diseases caused by viral agents kill millions of people every year. The improvement
of prevention and treatment of viral infections and their associated diseases remains one …
of prevention and treatment of viral infections and their associated diseases remains one …
Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins
G D'Onofrio, D Mouchiroud, B Aïssani, C Gautier… - Journal of molecular …, 1991 - Springer
We have analyzed the correlation that exists between the GC levels of third and first or second
codon position for about 1400 human coding sequences. The linear relationship that was …
codon position for about 1400 human coding sequences. The linear relationship that was …