Coding over sets for DNA storage

A Lenz, PH Siegel, A Wachter-Zeh… - IEEE Transactions on …, 2019 - ieeexplore.ieee.org
… the storage of data in synthetic deoxyribonucleic acid (DNA). We investigate a storage
model where a data set is represented by an unordered set of M sequences, each of length L. …

Improved coding over sets for DNA-based data storage

H Wei, M Schwartz - IEEE Transactions on Information Theory, 2021 - ieeexplore.ieee.org
codes that can be used as primer addresses were proposed in [3], [20] to equip the DNA
storage … In this paper, we continue the study of coding over sets. We follow the model of [10] and …

Design of constraint coding sets for archive DNA storage

Q Yin, Y Zheng, B Wang… - IEEE/ACM transactions on …, 2021 - ieeexplore.ieee.org
… In this study, the design of coding sets in DNA storage is discussed. Constraints and … coding
sets. This can effectively reduce the error rate in DNA storage process and improve storage

Sequence-subset distance and coding for error control in DNA-based data storage

W Song, K Cai, KAS Immink - IEEE Transactions on Information …, 2020 - ieeexplore.ieee.org
… error control for DNA storage channel by introducing a new metric, termed the sequencesubset
distance, over the power set of the set of all vectors of fixed length over a finite alphabet, …

CLGBO: An algorithm for constructing highly robust coding sets for DNA storage

Y Zheng, J Wu, B Wang - Frontiers in genetics, 2021 - frontiersin.org
… increase the number of DNA coding sets and create conditions for storing large files. In …
bounds of the coding sets directly leads to improvements of the coding rate. The coding rate is …

Adaptive coding for DNA storage with high storage density and low coverage

B Cao, X Zhang, S Cui, Q Zhang - NPJ systems biology and …, 2022 - nature.com
… content threshold during non-payload coding can be set in the DNA storage system based
… The table of lower bounds for the set of non-payload encoding under different constraints is …

Minimum free energy coding for DNA storage

B Cao, X Zhang, J Wu, B Wang… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
… may be computationally difficult because the size of the solution space is too large, so we
consider using heuristic algorithms to design DNA storage coding sets. In this paper, we …

New trends of digital data storage in DNA

PY De Silva, GU Ganegoda - BioMed research international, 2016 - Wiley Online Library
… the various methods used for encoding and encrypting data onto DNA while identifying the
… is better to use this approach to enlarge the code words of already designed word sets [11]. …

Cover your bases: How to minimize the sequencing coverage in DNA storage systems

D Bar-Lev, O Sabary, R Gabrys… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
… pair an error-correcting code with a given DNA storage system in order to … set (and not a
vector) of strands is stored in the DNA storage system. However, since the strands in these sets

Codes for DNA storage channels

HM Kiah, GJ Puleo, O Milenkovic - 2015 IEEE Information …, 2015 - ieeexplore.ieee.org
… of codes for two classes of errors arising in the DNA storage … studied in classical coding
theory. Our third contribution is a … the set of its q outgoing arcs and E−(w) to denote the set of …