[HTML][HTML] RAS proteins and their regulators in human disease
DK Simanshu, DV Nissley, F McCormick - Cell, 2017 - cell.com
RAS proteins are binary switches, cycling between ON and OFF states during signal
transduction. These switches are normally tightly controlled, but in RAS-related diseases, such as …
transduction. These switches are normally tightly controlled, but in RAS-related diseases, such as …
Undermining glutaminolysis bolsters chemotherapy while NRF2 promotes chemoresistance in KRAS-driven pancreatic cancers
…, M Yi, TM Guerin, SV Kozlov, DV Nissley… - Cancer …, 2020 - aacrjournals.org
These findings illuminate the mechanistic features of KRAS-mediated chemoresistance and
provide a rationale for exploiting metabolic reprogramming in pancreatic cancer cells to …
provide a rationale for exploiting metabolic reprogramming in pancreatic cancer cells to …
KRAS interaction with RAF1 RAS-binding domain and cysteine-rich domain provides insights into RAS-mediated RAF activation
…, T Taylor, JP Denson, D Esposito, DV Nissley… - Nature …, 2021 - nature.com
The first step of RAF activation involves binding to active RAS, resulting in the recruitment of
RAF to the plasma membrane. To understand the molecular details of RAS-RAF interaction, …
RAF to the plasma membrane. To understand the molecular details of RAS-RAF interaction, …
Structural basis of recognition of farnesylated and methylated KRAS4b by PDEδ
…, WK Gillette, PH Frank, R Ghirlando, DV Nissley… - Proceedings of the …, 2016 - pnas.org
Farnesylation and carboxymethylation of KRAS4b (Kirsten rat sarcoma isoform 4b) are
essential for its interaction with the plasma membrane where KRAS-mediated signaling events …
essential for its interaction with the plasma membrane where KRAS-mediated signaling events …
ssGSEA score-based Ras dependency indexes derived from gene expression data reveal potential Ras addiction mechanisms with possible clinical implications
M Yi, DV Nissley, F McCormick, RM Stephens - Scientific reports, 2020 - nature.com
For nearly a decade, the difficulties associated with both the determination and reproducibility
of Ras-dependency indexes (RDIs) have limited their application and further delineation of …
of Ras-dependency indexes (RDIs) have limited their application and further delineation of …
Comparative analysis of KRAS4a and KRAS4b splice variants reveals distinctive structural and functional properties
…, T Taylor, S Messing, D Esposito, DV Nissley… - Science …, 2024 - science.org
KRAS, the most frequently mutated oncogene in human cancer, produces two isoforms,
KRAS4a and KRAS4b, through alternative splicing. These isoforms differ in exon 4, which …
KRAS4a and KRAS4b, through alternative splicing. These isoforms differ in exon 4, which …
APOBEC3G hypermutates genomic DNA and inhibits Ty1 retrotransposition in yeast
AJ Schumacher, DV Nissley, RS Harris - Proceedings of the National …, 2005 - pnas.org
Human cells harbor a variety of factors that function to block the proliferation of foreign
nucleic acid. The APOBEC3G enzyme inhibits the replication of retroviruses by deaminating …
nucleic acid. The APOBEC3G enzyme inhibits the replication of retroviruses by deaminating …
Machine learning–driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins
…, FC Lightstone, F McCormick, DV Nissley… - Proceedings of the …, 2022 - pnas.org
RAS is a signaling protein associated with the cell membrane that is mutated in up to 30%
of human cancers. RAS signaling has been proposed to be regulated by dynamic …
of human cancers. RAS signaling has been proposed to be regulated by dynamic …
Sensitive drug-resistance assays reveal long-term persistence of HIV-1 variants with the K103N nevirapine (NVP) resistance mutation in some women and infants …
T Flys, DV Nissley, CW Claasen, D Jones… - The Journal of …, 2005 - academic.oup.com
BackgroundThe HIV Network for Prevention Trials (HIVNET) 012 trial showed that NVP
resistance (NVPR) emerged in some women and children after the administration of single-dose …
resistance (NVPR) emerged in some women and children after the administration of single-dose …
Machine learning-driven multiscale modeling: bridging the scales with a next-generation simulation infrastructure
…, JN Glosli, FC Lightstone, DV Nissley… - Journal of Chemical …, 2023 - ACS Publications
Interdependence across time and length scales is common in biology, where atomic interactions
can impact larger-scale phenomenon. Such dependence is especially true for a well-…
can impact larger-scale phenomenon. Such dependence is especially true for a well-…