User profiles for Hui Shen

Hui Shen

Van Andel Research Institute
Verified email at vai.org
Cited by 128155

Identifying major depression using whole-brain functional connectivity: a multivariate pattern analysis

LL Zeng, H Shen, L Liu, L Wang, B Li, P Fang, Z Zhou… - Brain, 2012 - academic.oup.com
Recent resting-state functional connectivity magnetic resonance imaging studies have shown
significant group differences in several regions and networks between patients with major …

Nonlinear bending of functionally graded carbon nanotube-reinforced composite plates in thermal environments

HS Shen - Composite Structures, 2009 - Elsevier
This paper presents an investigation on the nonlinear bending of simply supported,
functionally graded nanocomposite plates reinforced by single-walled carbon nanotubes (SWCNTs) …

[PDF][PDF] Pan-cancer patterns of somatic copy number alteration

…, C Sougnez, SB Gabriel, B Hernandez, H Shen… - Nature …, 2013 - nature.com
Determining how somatic copy number alterations (SCNAs) promote cancer is an important
goal. We characterized SCNA patterns in 4,934 cancers from The Cancer Genome Atlas Pan…

[HTML][HTML] Interplay between the cancer genome and epigenome

H Shen, PW Laird - Cell, 2013 - cell.com
Cancer arises as a consequence of cumulative disruptions to cellular growth control with
Darwinian selection for those heritable changes that provide the greatest clonal advantage. …

Inferring tumour purity and stromal and immune cell admixture from expression data

…, H Kim, W Torres-Garcia, V Treviño, H Shen… - Nature …, 2013 - nature.com
Infiltrating stromal and immune cells form the major fraction of normal cells in tumour tissue
and not only perturb the tumour signal in molecular studies but also have an important role in …

[HTML][HTML] The immune landscape of cancer

…, S Bullman, AI Ojesina, A Lamb, W Zhou, H Shen… - Immunity, 2018 - cell.com
We performed an extensive immunogenomic analysis of more than 10,000 tumors comprising
33 diverse cancer types by utilizing data compiled by TCGA. Across cancer types, we …

[HTML][HTML] Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma

…, L Ding, RK Wilson, D Van Den Berg, H Shen… - Cancer cell, 2010 - cell.com
We have profiled promoter DNA methylation alterations in 272 glioblastoma tumors in the
context of The Cancer Genome Atlas (TCGA). We found that a distinct subset of samples …

[HTML][HTML] Oncogenic signaling pathways in the cancer genome atlas

…, I Bahceci, L Dervishi, U Dogrusoz, W Zhou, H Shen… - Cell, 2018 - cell.com
Genetic alterations in signaling pathways that control cell-cycle progression, apoptosis, and
cell growth are common hallmarks of cancer, but the extent, mechanisms, and co-…

Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

…, JC Pignon, H Zhao, T Li, J Novak, P Jiang, H Shen… - Genome biology, 2016 - Springer
Background Understanding the interactions between tumor and the host immune system is
critical to finding prognostic biomarkers, reducing drug resistance, and developing new …

Absolute quantification of somatic DNA alterations in human cancer

…, K Cibulskis, E Helman, A McKenna, H Shen… - Nature …, 2012 - nature.com
We describe a computational method that infers tumor purity and malignant cell ploidy
directly from analysis of somatic DNA alterations. The method, named ABSOLUTE, can detect …