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Katharina WauryPhD Student, Vrije Universiteit Amsterdam Подтвержден адрес электронной почты в домене vu.nl Цитируется: 110 |
Bioinformatics tools and data resources for assay development of fluid protein biomarkers
K Waury, EAJ Willemse, E Vanmechelen… - Biomarker …, 2022 - Springer
Fluid protein biomarkers are important tools in clinical research and health care to support
diagnosis and to monitor patients. Especially within the field of dementia, novel biomarkers …
diagnosis and to monitor patients. Especially within the field of dementia, novel biomarkers …
Deciphering Protein Secretion from the Brain to Cerebrospinal Fluid for Biomarker Discovery
K Waury, R de Wit, IMW Verberk… - Journal of proteome …, 2023 - ACS Publications
Cerebrospinal fluid (CSF) is an essential matrix for the discovery of neurological disease
biomarkers. However, the high dynamic range of protein concentrations in CSF hinders the …
biomarkers. However, the high dynamic range of protein concentrations in CSF hinders the …
Ten quick tips for sequence-based prediction of protein properties using machine learning
The ubiquitous availability of genome sequencing data explains the popularity of machine
learning-based methods for the prediction of protein properties from their amino acid …
learning-based methods for the prediction of protein properties from their amino acid …
Multi-omics interdisciplinary research integration to accelerate dementia biomarker development (MIRIADE)
E Mavrina, L Kimble, K Waury, D Gogishvili… - Frontiers in …, 2022 - frontiersin.org
Proteomics studies have shown differential expression of numerous proteins in dementias
but have rarely led to novel biomarker tests for clinical use. The Marie Curie MIRIADE project …
but have rarely led to novel biomarker tests for clinical use. The Marie Curie MIRIADE project …
Proteome encoded determinants of protein sorting into extracellular vesicles
Extracellular vesicles (EVs) are membranous structures released by cells into the extracellular
space and are thought to be involved in cell‐to‐cell communication. While EVs and their …
space and are thought to be involved in cell‐to‐cell communication. While EVs and their …
SeRenDIP-CE: sequence-based interface prediction for conformational epitopes
Motivation Antibodies play an important role in clinical research and biotechnology, with their
specificity determined by the interaction with the antigen’s epitope region, as a special type …
specificity determined by the interaction with the antigen’s epitope region, as a special type …
Comparison of sequence-and structure-based antibody clustering approaches on simulated repertoire sequencing data
Repertoire sequencing allows us to investigate the antibody-mediated immune response.
The clustering of sequences is a crucial step in the data analysis pipeline, aiding in the …
The clustering of sequences is a crucial step in the data analysis pipeline, aiding in the …
Data-driven evaluation of suitable immunogens for improved antibody selection
K Waury, H Kvartsberg, H Zetterberg, K Blennow… - bioRxiv, 2024 - biorxiv.org
Antibodies are indispensable in laboratory and clinical applications due to their high
specificity and affinity for protein antigens. However, selecting the right protein fragments as …
specificity and affinity for protein antigens. However, selecting the right protein fragments as …
A pipeline for the identification and examination of proteins implicated in frontotemporal dementia
K Waury - 2020 - diva-portal.org
Frontotemporal dementia is a neurodegenerative disorder with high heterogeneity on the
genetic, pathological and clinical level. The familial form of the disease is mainly caused by …
genetic, pathological and clinical level. The familial form of the disease is mainly caused by …
Methods to discover and validate biofluid-based biomarkers in neurodegenerative dementias
Neurodegenerative dementias are progressive diseases that cause neuronal network
breakdown in different brain regions often because of accumulation of misfolded proteins in the …
breakdown in different brain regions often because of accumulation of misfolded proteins in the …