User profiles for Petr Skoda

Petr Škoda

- Verified email at asu.cas.cz - Cited by 1744

Petr Škoda

- Verified email at ksi.mff.cuni.cz - Cited by 1447

Knowledge graphs for the life sciences: Recent developments, challenges and opportunities

…, V López, P Monnin, C Pesquita, P Škoda… - arXiv preprint arXiv …, 2023 - arxiv.org
The term life sciences refers to the disciplines that study living organisms and life processes,
and include chemistry, biology, medicine, and a range of other related disciplines. …

PrankWeb: a web server for ligand binding site prediction and visualization

L Jendele, R Krivak, P Skoda, M Novotny… - Nucleic acids …, 2019 - academic.oup.com
PrankWeb is an online resource providing an interface to P2Rank, a state-of-the-art method
for ligand binding site prediction. P2Rank is a template-free machine learning method based …

PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures

D Jakubec, P Skoda, R Krivak, M Novotny… - Nucleic Acids …, 2022 - academic.oup.com
Abstract Knowledge of protein–ligand binding sites (LBSs) enables research ranging from
protein function annotation to structure-based drug design. To this end, we have previously …

PrankWeb 4: a modular web server for protein–ligand binding site prediction and downstream analysis

L Polák, P Škoda, K Riedlová, R Krivák… - Nucleic acids …, 2025 - academic.oup.com
Abstract Knowledge of protein–ligand binding sites (LBSs) is crucial for advancing our
understanding of biology and developing practical applications in fields such as medicine or …

Ondřejov echelle spectrograph, ground based support facility for exoplanet missions

…, E Plávalová, L Řezba, J Sloup, P Škoda… - Publications of the …, 2020 - iopscience.iop.org
Fulfilling the goals of space-based exoplanetary transit surveys, like Kepler and TESS, is
impossible without ground-based spectroscopic follow-up. In particular, the first-step vetting of …

PDBe-KB: a community-driven resource for structural and functional annotations

…, L Serrano, I Sillitoe, G Singh, P Skoda… - Nucleic Acids …, 2020 - academic.oup.com
The Protein Data Bank in Europe-Knowledge Base (PDBe-KB, https://pdbe-kb.org ) is a
community-driven, collaborative resource for literature-derived, manually curated and …

Active deep learning method for the discovery of objects of interest in large spectroscopic surveys

P Škoda, O Podsztavek, P Tvrdík - Astronomy & Astrophysics, 2020 - aanda.org
Context. Current archives of the LAMOST telescope contain millions of pipeline-processed
spectra that have probably never been seen by human eyes. Most of the rare objects with …

[PDF][PDF] Observation data model core components and its implementation in the Table Access Protocol, version 1.0

…, B Rino, J de Dios Santander, P Skoda - IVOA …, 2011 - ivoa.net
This document defines the core components of the Observation data model that are
necessary to perform data discovery when querying data centers for observations of interest. It …

Semantic web: Past, present, and future

A Scherp, G Groener, P Skoda, K Hose… - … on Graph Data and …, 2024 - repositum.tuwien.at
Ever since the vision was formulated, the Semantic Web has inspired many generations of
innovations. Semantic technologies have been used to share vast amounts of information on …

The extremely rapid rotational braking of the magnetic helium-strong star HD 37776

…, D Korčáková, M Zejda, IK Iliev, P Škoda… - Astronomy & …, 2008 - aanda.org
Context. Light and spectrum variations of the magnetic chemically peculiar (mCP) stars are
explained by the oblique rigid rotator model with a rotation period usually assumed to be …