The spectrum kernel: A string kernel for SVM protein classification
… kernel, we present a new string kernel (sequencesimilarity kernel), the spectrum kernel, for
… , we introduce a simple string kernel, which we call the spectrum kernel, on the input space X …
… , we introduce a simple string kernel, which we call the spectrum kernel, on the input space X …
Text classification using string kernels
… of elements (strings, graphs, images) an ‘inner product’ in a feature space. For such kernels,
it … We examine the use of a kernel method based on string alignment for text categorization …
it … We examine the use of a kernel method based on string alignment for text categorization …
Large scale learning with string kernels
… In this chapter we study string kernels that can be computed in linear time wrt … string kernels
that are particularly well suited for sequence analysis tasks (section 4.2). We study kernels …
that are particularly well suited for sequence analysis tasks (section 4.2). We study kernels …
Text classification using string kernels
H Lodhi, J Shawe-Taylor… - Advances in neural …, 2000 - proceedings.neurips.cc
… We introduce a novel kernel for comparing two text documents. The kernel is an inner product
in … In this paper we examine the use of a kernel method based on string alignment for text …
in … In this paper we examine the use of a kernel method based on string alignment for text …
String kernels construction and fusion: a survey with bioinformatics application
… ● Sequence kernels Sequence kernel is a kind of string kernel in … A protein or gene sequence
is considered as a string defined … We summarize the existing string kernel method and its …
is considered as a string defined … We summarize the existing string kernel method and its …
Fast string kernels using inexact matching for protein sequences
C Leslie, R Kuang - Journal of Machine Learning Research, 2004 - jmlr.org
… of k-mer based string kernels related to the recently presented mismatch kernel and designed
for use … These new kernels – restricted gappy kernels, substitution kernels, and wildcard …
for use … These new kernels – restricted gappy kernels, substitution kernels, and wildcard …
[PDF][PDF] Mismatch string kernels for SVM protein classification
… We introduce a class of string kernels, called mismatch kernels, for use with support
vector machines (SVMs) in a discriminative approach to the protein classification problem …
vector machines (SVMs) in a discriminative approach to the protein classification problem …
[PDF][PDF] Kernel Methods and String Kernels for Authorship Analysis.
… More precisely, we treated texts as just sequences of symbols (strings) and used string
kernels in conjunction with different kernel-based learning methods: supervised and …
kernels in conjunction with different kernel-based learning methods: supervised and …
Profile-based string kernels for remote homology detection and motif extraction
… For the case of profile string kernels, we show how we can use the trained SVM classifiers
to define positional scores along the protein profiles that define a smoothed contribution to the …
to define positional scores along the protein profiles that define a smoothed contribution to the …
Mismatch string kernels for SVM protein classification
… We introduce a class of string kernels, called mismatch kernels, for use with support
vector machines (SVMs) in a discriminative approach to the protein classification problem …
vector machines (SVMs) in a discriminative approach to the protein classification problem …