… to color only the matched residues in the structure superpositions, … the SSD user interface
module allows for changing the color of structures and for hiding and redisplaying structures…

… about macromolecular superposition, we recommend the reading of refs ( 14 , 15 ). For the
problem of … This section provides information about the databases in alphabetical order. …

… The most common method for three-dimensional (3D) structure comparison is called
structure superposition. Superposition or superimposition is simply the process of rotating or …

… the server to visualize the superposed 3D structures with the … , the server produces only the
structural superposition output. … provided in the options (a) and (b) to find the invariant water …

… The superposition of 3D structures is a time-consuming task. For an extensive review on
methods for structural alignment see ref 15 and the … able to solve the superposition problem up …

… entries but should be addressed in a next database release: … The 3D-superposition algorithm
was developed in our group … structures, showing the very high similarity of the structures …

… Here we focus on the superposition model, which was originally … of the most probable
model of structural distortions around a central transition ion and extraction of useful structural …

… the virtual screening of compound databases that is based on explicit threedimensional
molecular superpositions… threedimensional structure and conformational flexibility of the …

… partially automated databases, the quality of the alignment and superposition are judged by
eye and dissimilar structures or sequences are moved into a separate family (see the family …

… Suppos and Comp3D algorithms use positional rmsd criteria calculated from rigid-body
superpositions, whereas the Dali algorithm optimizes the agreement of intramolecular pair …