User profiles for Ye Deng

Ye Deng

Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences
Verified email at rcees.ac.cn
Cited by 30627

Molecular ecological network analyses

Y Deng, YH Jiang, Y Yang, Z He, F Luo, J Zhou - BMC bioinformatics, 2012 - Springer
Background Understanding the interaction among different species within a community and
their responses to environmental changes is a central goal in ecology. However, defining …

Functional molecular ecological networks

J Zhou, Y Deng, F Luo, Z He, Q Tu, X Zhi - MBio, 2010 - journals.asm.org
Biodiversity and its responses to environmental changes are central issues in ecology and
for society. Almost all microbial biodiversity research focuses on “species” richness and …

High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats

J Zhou, Z He, Y Yang, Y Deng, SG Tringe… - MBio, 2015 - journals.asm.org
Understanding the structure, functions, activities and dynamics of microbial communities in
natural environments is one of the grand challenges of 21st century science. To address this …

Deep-sea oil plume enriches indigenous oil-degrading bacteria

…, S Osman, Z Lu, JD Van Nostrand, Y Deng… - Science, 2010 - science.org
The biological effects and expected fate of the vast amount of oil in the Gulf of Mexico from
the Deepwater Horizon blowout are unknown owing to the depth and magnitude of this event. …

Microbiome-functionality in anaerobic digesters: a critical review

X Zhang, Y Wang, P Jiao, M Zhang, Y Deng, C Jiang… - Water Research, 2024 - Elsevier
Microbially driven anaerobic digestion (AD) processes are of immense interest due to their
role in the biovalorization of biowastes into renewable energy resources. The function-…

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

J Zhou, Y Deng, F Luo, Z He, Y Yang - MBio, 2011 - journals.asm.org
Understanding the interactions among different species and their responses to environmental
changes, such as elevated atmospheric concentrations of CO 2 , is a central goal in …

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

J Zhou, YE Deng, P Zhang, K Xue, Y Liang… - Proceedings of the …, 2014 - pnas.org
Unraveling the drivers of community structure and succession in response to environmental
change is a central goal in ecology. Although the mechanisms shaping community structure …

A general framework for quantitatively assessing ecological stochasticity

D Ning, Y Deng, JM Tiedje, J Zhou - … of the National Academy of Sciences, 2019 - pnas.org
Understanding the community assembly mechanisms controlling biodiversity patterns is a
central issue in ecology. Although it is generally accepted that both deterministic and …

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

…, C Lozupone, K Faust, J Friedman, Y Deng… - The ISME …, 2016 - academic.oup.com
Disruption of healthy microbial communities has been linked to numerous diseases, yet
microbial interactions are little understood. This is due in part to the large number of bacteria, …

Global diversity and biogeography of bacterial communities in wastewater treatment plants

…, Y Zhang, J Vierheilig, GF Wells, Y Yang, Y Deng… - Nature …, 2019 - nature.com
Microorganisms in wastewater treatment plants (WWTPs) are essential for water purification
to protect public and environmental health. However, the diversity of microorganisms and …