The PAS superfamily: sensors of environmental and developmental signals

YZ Gu, JB Hogenesch… - Annual review of …, 2000 - annualreviews.org
Over the past decade, PAS domains have been identified in dozens of signal transduction
molecules and various forms have been found in animals, plants, and prokaryotes. In this …

The basic-helix–loop–helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors

JB Hogenesch, YZ Gu, S Jain, CA Bradfield - Proceedings of the National …, 1998 - pnas.org
We report that MOP3 is a general dimerization partner for a subset of the basic-helix–loop–helix
(bHLH)-PER–ARNT–SIM (PAS) superfamily of transcriptional regulators. We …

Molecular characterization and chromosomal localization of a third α-class hypoxia inducible factor subunit, HIF3α

YZ Gu, SM Moran, JB Hogenesch, L Wartman… - Gene …, 2018 - pmc.ncbi.nlm.nih.gov
Hypoxia inducible factors (HIFs) are heterodimeric transcription factors that regulate a
number of adaptive responses to low oxygen tension. They are composed of α- and β-subunits …

Characterization of a subset of the basic-helix-loop-helix-PAS superfamily that interacts with components of the dioxin signaling pathway

…, WK Chan, VH Jackiw, RC Brown, YZ Gu… - Journal of Biological …, 1997 - jbc.org
In an effort to better understand the mechanism of toxicity of 2,3,7,8-tetrachlorodibenzo-p-dioxin,
we employed an iterative search of human expressed sequence tags to identify novel …

Renal biomarker qualification submission: a dialog between the FDA-EMEA and Predictive Safety Testing Consortium

…, D Holder, D Andrews-Cleavenger, YZ Gu… - Nature …, 2010 - nature.com
The first formal qualification of safety biomarkers for regulatory decision making marks a
milestone in the application of biomarkers to drug development. Following submission of drug …

Cross-talk between the aryl hydrocarbon receptor and hypoxia inducible factor signaling pathways: demonstration of competition and compensation

WK Chan, G Yao, YZ Gu, CA Bradfield - Journal of Biological Chemistry, 1999 - jbc.org
The aryl hydrocarbon receptor (AHR) and the α-class hypoxia inducible factors (HIF1α, HIF2α,
and HIF3α) are basic helix-loop-helix PAS (bHLH-PAS) proteins that heterodimerize with …

Characterization and interlaboratory comparison of a gene expression signature for differentiating genotoxic mechanisms

…, AJ Fornace Jr, O Grenet, Y Gu… - Toxicological …, 2009 - academic.oup.com
The genotoxicity testing battery is highly sensitive for detection of chemical carcinogens.
However, it features a low specificity and provides only limited mechanistic information required …

Towards consensus practices to qualify safety biomarkers for use in early drug development

…, K Carl, N Collins, P Goering, F Goodsaid, YZ Gu… - Nature …, 2010 - nature.com
Application of any new biomarker to support safety-related decisions during regulated phases
of drug development requires provision of a substantial data set that critically assesses …

[PDF][PDF] The basic helix-loop-helix-PAS protein MOP9 is a brain-specific heterodimeric partner of circadian and hypoxia factors

JB Hogenesch, YZ Gu, SM Moran… - The Journal of …, 2000 - jneurosci.org
PAS (PER, ARNT, SIM) proteins play important roles in adaptation to low atmospheric and
cellular oxygen levels, exposure to certain environmental pollutants, and diurnal oscillations …

In Vitro Detection of Drug-Induced Phospholipidosis Using Gene Expression and Fluorescent Phospholipid–Based Methodologies

P Nioi, BK Perry, EJ Wang, YZ Gu… - Toxicological …, 2007 - academic.oup.com
Phospholipidosis (PLD) is characterized by the excessive intracellular accumulation of
phospholipids. It is well established that a large number of cationic amphiphilic drugs have the …