Continuous evaluation of denoising strategies in resting-state fMRI connectivity using fMRIPrep and Nilearn

HT Wang, SL Meisler, H Sharmarke… - PLOS Computational …, 2024 - journals.plos.org
… fMRI time series using Nilearn, based on fMRIPrep … Nilearn analysis functions. The first,
basic API retrieves different classes of confound regressors sorted in categories of noise, nilearn.…

Exploring Brain Imaging Analysis With Nilearn and Related Python Packages

K Uludag - Signal and Image Processing Techniques for Defense …, 2025 - igi-global.com
… as nilearn package. The “pip install nilearn” command is used to install the Nilearn package
… After installing Nilearn using the “pip install nilearn” command, we can proceed to execute …

Nilearn-based Multimodal Fusion Analysis for Integrating Brain Image Analysis

A Khan - 2023 14th International Conference on Computing …, 2023 - ieeexplore.ieee.org
… fusion analysis, facilitated by Nilearn, has the potential to … This paper explores the application
of Nilearn in multimodal … The paper showcases Nilearn's capabilities in preprocessing…

[PDF][PDF] A reproducible benchmark of resting-state fMRI denoising strategies using fMRIPrep and Nilearn

HT Wang, SL Meisler, H Sharmarke, N Clarke… - bioRxiv, 2023 - neurolibre.org
Reducing contributions from non-neuronal sources is a crucial step in functional magnetic
resonance imaging (fMRI) connectivity analyses. Many viable strategies for denoising fMRI …

Exploring Reproducibility of fMRI Analysis Using SPM and Nilearn Open-Source Tools

HG Martínez-Fuentes, MI Gutierrez… - 2024 21st …, 2024 - ieeexplore.ieee.org
… , this work presents a comparative analysis using Nilearn, a library available for Python, and
SPM, … The results indicated that the design matrices of SPM and Nilearn are slightly different …

How to analyze fmri data with open source tools: An introduction to supervised machine learning algorithm for multi-voxel patterns analysis

YU Yu-Ying, YU Hai-Feng, LI Bing… - Journal of …, 2022 - jps.ecnu.edu.cn
… algorithm by using open data in combination with Nilearn library and scikit-learn library tools
… building a domain-specific library (such as Nilearn) that was dedicated to applying scikit-…

[PDF][PDF] GROUP 58: AGE PREDICTION FROM MULTIMODAL FMRI DATA

G Ravichandran, S Modi, SR Uppugunduri - noiselab.ucsd.edu
… In comparison to the existing work’s results of SpaceNet Regressor model and the in-built
dataset in nilearn library, the results we achieved shows an improvement by a 4 unit loss in …

[PDF][PDF] Giga Connectome: a BIDS-app for time series and functional connectome extraction

HT Wang, R Gau, N Clarke, Q Dessain… - Journal of Open Source …, 2025 - joss.theoj.org
… The coverage of the atlas is also included as an HTML visual report, provided by nilearn.masker
for users to examine the quality of the atlas coverage. More information about the usage…

Applying python in brain science education

X Zhang, J Huang, Y Yang, X He, R Liu… - … Joint Conference on …, 2019 - ieeexplore.ieee.org
… same parameters as the previously mentioned in nilearn.signal.clean function. After …
NiLearn as an example, the class needs to be used for Searchlight analysis of fMRI data is nilearn

[PDF][PDF] Loading and plotting of cortical surface representations in Nilearn

JM Huntenburg, A Abraham, J Loula, F Liem… - Research Ideas and …, 2017 - riojournal.com
Processing neuroimaging data on the cortical surface traditionally requires dedicated heavy-weight
software suites. Here, we present an initial support of cortical surfaces in Python …