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This project contains the public version of the software produced on the European research project, SUDDEN. See http://www.sudden.org.uk/ for the website of the project.
This public version contains the full software but a cut down ontology.
This site is deprecated, more recent project can be found at http://obda.inf.unibz.it/ A Java library for Ontology Based Data Access. Provides support to specify mappings from data sources to ontologies.
AlViz is a research prototype for visual ontology alignment implemented as multiple-view plug-in for Protege using J-Trees and Graphs. Based on similarity measures of an ontology matching algorithm AlViz helps to assess and optimize the alignment results
A SOA-based framework for multilingual question answering (QA) systems that answer natural language questions with the help of a domain ontology and structured answer data sources from freely specifiable domains.
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An ontology-centered framework within the Semantic Web infrastructure that aims at standardizing various knowledge involved in the biological modeling processes. Three biological cases have been developed to evaluate the implementation of this framework.
DATAONTO is a protege tab widget plugin that automatically builds domain ontlogies from relational database's metadata. once ontlogies are generated,this plugin can look for changes in database metadata and implement these changes in ontology.
go2Sim measures semantic similarity between genes annotated with Gene Ontology terms. Resnik and Wang methods supported. A new improvement of the methods is currently in development, it will be available as soon as the results have been published.
AKtive Media is an ontology based cross-media annotation (Images and Text) system. Our goal is to automate the process of annoation by suggesting knowledge to the user in an interactive way while the user is annotating and hence minimizing user effort.
The Cell Cycle Ontology extends existing ontologies for cell cycle knowledge building a resource that integrates and manages knowledge about the cell cycle components and regulatory aspects in OBO, OWL, and other commonly used ontology representation
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Interoperability enabling tools, for exchanging technical data between companies, or for internal data integration, alpha-numeric, 2D or 3D data. Compatible with ISO 15926 and expressed in ontology using RDF/OWL.
WSMO Studio is a Semantic Web Service and Semantic Business Process modelling environment based on the Web Services Modelling Ontology (WSMO). WSMO Studio is available as a set of Eclipse plug-ins that can be extended and customised by 3rd parties.
JOFS is a java project concerning the develop of an owl ontology to store meta informations about files and documents. It will provide a core to easily manage the ontology and an architecture to easily add to the core functionalities.
The EURP OntoLookup is a CREOLE plugin for GATE http://www.gate.ac.uk/ which uses an OWL ontology for lookup. It has a very fast implementation based on a tree of hash maps.
Renders data entry forms for XML Schema that meet certain requirements. Users can use the forms to create data files that validate against the original schema. The application also integrates ontology services into data entry activities.
Malasco is an ontology matching system for matching large-scale OWL ontologies. It can use different partitioning algorithms and existing matching tools.
OntoBridge is a java library that eases the management of ontologies. It is based on Jena, uses simple textual identifiers to work with the ontology elements, loads local/online OWL ontologies, supports Pellet/DIG, and includes several examples.
Docgen plugin for Protege provides a quick export of all the content of an ontology (classes, instances and documentation) in various formats (html, pdf, fo...). Images, Graphs, URL are readyly included in reports.
METAmorphoses is a system for flexible and easy-to-use generation of RDF metadata directly from a relational database. Metadata are genereated according to a mapping from an existing database schema to a particular ontology.
OntMT is an implementation of the ontology-based model transformation approach. Its target audience are scientists and researchers who want to experiment with automated generation of QVT model transformations. The implementation is based on Eclipse.
GSCope3 performs microarray data analysis to find correlations between BLSOM clusters and any form of omic knowledge expressed in OSML. Includes example metabolic pathway, gene ontology, genome position, transcription and PPI knowledge in OSML format.
OBOES (Open Biomedical Ontology-Based Enrichment and Search) is an information-theory-based platform that embeds new integrative methods allowing biologists to evaluate new hypotheses.