Search Results for "spectral analysis"
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Showing 27 open source projects for "spectral analysis"
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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relax
Molecular dynamics by NMR data analysis
The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using... -
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Calibr is a tool for the spectrum-centric analysis of DIA data against DDA-based spectral library, to perform optimization of spectrum preprocessing and calculating various spectral similarity measures as features for validation. In addition to spectral similarity measures, Calibr provides other two types of features related to precursor ion and spectrum property and statistics from spectrum-spectrum matches (SSMs) for machine-learning based validation. To support users to conveniently conduct...
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Radiance
Highly accurate ray-tracing software system for UNIX computers
Radiance is a free, highly accurate ray-tracing software system for UNIX computers. It is a suite of programs designed for the analysis and visualization of lighting in design. Radiance is superior to simpler lighting calculation and rendering tools in that there are no limitations on the geometry or the materials that may be simulated. Scene geometry, materials, luminaires, time, date and sky conditions (for daylight calculations) are specified; spectral radiance (ie. luminance + color... -
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BioNet-Finder
Network-based modeling and analysis for complex biological data
..., genomic complexity, latent effects on the observed system, and output ranking. This is carried out applying network analysis methods from different fields, such as Structural Equation Modeling (SEM), together with data reduction algorithms (e.g., random walkers, spectral analysis, shortest path-based or topology-based algorithms). The BioNet-Finder project is at its initial steps, and it will continuously update with new methods and code. -
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QPROT is a software for differential protein expression using spectral count and intensity data. It also accounts for independent samples and paired samples. The input data should be rolled up to proteins before analysis. Extension to peptide level analysis is in progress.
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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Epsilon-Q
For multiple spectral library searching and quantitative analysis
Epsilon-Q offers mass spectrometry-based multiple spectral library searching and label-free quantitative analysis. Epsilon-Q contains two standalone tools: - simSPL Builder: Simulated spectral library builder - Combo-Spec Search: Multiple spectral library search tool -
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SoundRuler is a tool for acoustic analysis, graphing and teaching. It interactively recognizes and measures 35 temporal and spectral properties of each sound in a file. It also features several measurement, graphing and didactic modules.
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A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
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GenoSuite is a framework developed for proteogenomic analysis. An updated GenoSuite2 is just released where FDRScore (Jones et al. Proteomics 2009) based strategy is used to integrate results from multiple search algorithms. Prokaryotic Proteogenomic Tool(PPT) is developed as a part of GenoSuite framework. PPT is for finding novel translations in prokaryotic genomes and is dependent on Mass Spectrometry based proteomics data and related genome sequence. Some Key features of the tool...
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GPS Interactive Time Series Analysis
A software for processing and analyzing time series in Earth Science
Along with calculating basic statistics and quality parameters such as mean and variance, the soft-ware is capable of importing and visualizing different standard time series formats, determining and removing jumps and outliers, and makes numerical and publication quality graphical outputs. Bivariate statistical analysis (including correlation coefficient and linear regression) and time series analysis (including auto and cross-spectral analysis, wavelet power spectrum, spectrogram... -
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iMS2Flux is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data targeting metabolic flux analysis. To get started simply download and unzip the iMS2Flux.zip file and follow the getting started document for your OS. Current version 7.2.1 (last updated 9/30/2014) - Completes support and correction functionality for a new user specified generic data class. See the change log for full details.
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Specview is a Java GUI_based application for 1-D spectral visualization and analysis of astronomical spectrograms generated by a variety of observatories and instruments. Note that we no longer provide file distributions of this software. You are encouraged to visit the specview web site download page: http://www.stsci.edu/institute/software_hardware/specview/download to retrieve an installer appropriate for your platform.
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The Newton NMR Analysis framework is a Java-based application being developed at NMRFAM for performing n-dimensional spectral deconvolution of biomolecular NMR data sets by fast maximum likekihood reconstruction.
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JProGraM (PRObabilistic GRAphical Models in Java) is a statistical machine learning library. It supports statistical modeling and data analysis along three main directions: (1) probabilistic graphical models (Bayesian networks, Markov random fields, dependency networks, hybrid random fields); (2) parametric, semiparametric, and nonparametric density estimation (Gaussian models, nonparanormal estimators, Parzen windows, Nadaraya-Watson estimator); (3) generative models for random networks (small...
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TPFA-the answer book
Solutions of problems in functional analysis
The goal of the 5 Volumes of Theorems and Problems in Functional Analysis - The Answer Book is to provide the complete solutions for the exercises compiled in the ”core book” by A.A Kirillov and A.Gvichiani, ”Theorems and Problems in Functional Analysis, MIR editions, 1979” (TPFA). The problems cover most of the concepts of classical Functional Analysis: Distributions, Hilbert Spaces, Harmonic Analysis, Spectral Theory... The 828 exercises provided in TPFA represent an incredibly rich... -
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SkyTracer is a desktop software intended for data collection in radioastronomical observations, as well as data collection for other uses. It's interface aims to be rich and easy to use. Data collection can be achieved by one of these devices: PICADC (free Microchip PIC solution developed by me [will make publicly available soon]), MC Measurement Computing (MCC) board or any Sound Card with Line In or Mic input (used for spectral analysis).
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sigTOOL provides a user-extendable signal analysis environment for processing electrophysiological data within MATLAB. Neuron spike-train, + spectral and time-domain analyses are built in. See http://dx.doi.org/10.1016/j.jneumeth.2008.11.004
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An Educational Toolbox on Data Communications, including Encoding Schemes, Bit-Error-Rate (BER), Noise and Spectral Analysis for Scilab
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Sonic Visualiser is an application for inspecting and analysing the contents of music audio files. It combines powerful waveform and spectral visualisation tools with automated feature extraction plugins and annotation capabilities.
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FluxY
FluxY – a processing tool set for stable isotope label MS data
FluxY is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data used for metabolic flux analysis. To get started simply download and unzip the FluxY.zip file and follow the getting started document in the Instructions folder. -
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Spectral Orchestrator--A software tool for musicians and composers that creates harmonies/orchestrations from digitally recorded sound files. Currently compiles and runs in Linux and Mac OS X (and eventually Windows/Cygwin).
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A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.
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FRIDA (flexible rapid interactive data analysis) is a generic program for manipulating, fitting, and plotting x,z,y data. It is primarily aimed at spectral analysis, especially in neutron scattering. Note: project has moved away from sf.net.