Open Source Linux Data Management Systems - Page 14
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Data Management Systems for Linux
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luma.gl
High-performance Toolkit for WebGL-based data visualization
luma.gl is a GPU toolkit for the Web-focused primarily on data visualization use cases. luma.gl aims to provide support for GPU programmers that need to work directly with shaders and want a low abstraction API that remains conceptually close to the WebGPU and WebGL APIs. Unlike other common WebGL APIs, the developer can choose to use the parts of luma.gl that support their use case and leave the others behind. While generic enough to be used for general 3D rendering, luma.gl's mandate is primarily to support GPU needs of data visualization frameworks in the vis.gl suite. -
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md2googleslides
Generate Google Slides from markdown
Generate Google Slides from markdown & HTML. Run from the command line or embed in another application. This project was developed as an example of how to use the Slides API. While it does not yet produce stunningly beautiful decks, you are encouraged to use this tool for quickly prototyping presentations. The first time the command is run you will be prompted for authorization. OAuth token credentials are stored locally in a file named ~/.md2googleslides/credentials.json. Each time you will run the above comment, new slide deck will be generated. In order to work on exactly the same deck, just get the ID of the already generated slides. md2googleslides does not edit or control any theme-related options. Just set a base theme you want on Google Slides directly. Even if you will use, append option for deck reuse, theme will be not changed. Images can be placed on slides using image tags. Multiple images can be included. -
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miepython
Mie scattering of light by perfect spheres
miepython is a pure Python module to calculate light scattering for non-absorbing, partially-absorbing, or perfectly-conducting spheres. Mie theory is used, following the procedure described by Wiscombe. This code has been validated against his results. This code provides functions for calculating the extinction efficiency, scattering efficiency, backscattering, and scattering asymmetry. Moreover, a set of angles can be given to calculate the scattering for a sphere at each of those angles. -
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nichenetr
NicheNet: predict active ligand-target links between interacting cells
nichenetr: the R implementation of the NicheNet method. The goal of NicheNet is to study intercellular communication from a computational perspective. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with a prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest. This model of prior information on potential ligand-target links can then be used to infer active ligand-target links between interacting cells. NicheNet prioritizes ligands according to their activity (i.e., how well they predict observed changes in gene expression in the receiver cell) and looks for affected targets with high potential to be regulated by these prioritized ligands. -
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prettymaps
A small set of Python functions to draw pretty maps from OpenStreetMap
A Python package to draw maps with customizable styles from OpenStreetMap data. Created using the osmnx, matplotlib, shapely and vsketch packages. -
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reticulate
R Interface to Python
reticulate is an R package from Posit that creates seamless interoperability between R and Python. It lets you call Python modules, classes, and functions from within R, automatically translating between R and Python data structures. Useful for combining Python tooling with R projects, data analysis, and RMarkdown reports. -
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rudderstack
Privacy and Security focused Segment-alternative, in Golang
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sf (Simple Features)
Simple Features for R
sf is an R package that implements “simple features” (standardized vector spatial data) for R. It allows spatial vector data (points, lines, polygons etc.) to be represented as records in data frames (or tibbles) with geometry list columns, and performs spatial operations (geometry operations, coordinate reference system transformations, reading/writing spatial data, integration with spatial databases etc.). It interfaces to GDAL, GEOS, PROJ libraries for robust operations. Reading and writing spatial vector data via many file formats/drivers through GDAL, and spatial databases (PostGIS etc.) Supports all standard simple feature geometry types (points, linestrings, polygons, multi-geometries etc.) in various dimensions (XY, XYZ, XYM, XYZM). -
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tabix
Tabix.io UI
Open source simple business intelligence application and sql editor tool for Clickhouse. Auto-completion of fields, dictionaries and functions. Tips on fields and functions in Russian and English. Reformatting queries / autoformat. Minimizes brackets and subqueries. Setting the autocompletion / enableLiveAutocompletion. Backlight brackets. The list of functions is loaded based on the capabilities of the server. Displays which query is running. Display the number of tables at the database. The icon of the table depends on its engine. List of fields in the table and inserting the field when clicking in the editor. DB selection via double click in the tree, pop-up window about selection. Search in the tree of objects, filtering the tree. Rebuilding the list of databases / tables after the query is executed. Table with information about completed requests at the end of the list / Requests in the tab are logged for performance comparison. -
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vizceral
WebGL visualization for displaying animated traffic graphs
vizceral is a component for displaying traffic data on a webgl canvas. If a graph of nodes and edges with data about traffic volume is provided, it will render a traffic graph animating the connection volume between nodes. This component can take multiple traffic graphs and will generate a 'global' graph showing all incoming traffic into each of the 'regions', with support for cross-region traffic. There are three levels of information, global, regional, and service-level, with clicking or double-clicking on a node bringing you one level deeper. We are not using this internally at Netflix at this time and the project is not actively being worked on. We occasionally look at the repo and will review PRs as time permits. Current development focuses on a most recent version of Chrome. Minor sanity checking for the latest versions of Safari and Firefox. -
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xsv
A fast CSV command line toolkit written in Rust
xsv is a command line program for indexing, slicing, analyzing, splitting and joining CSV files. Commands should be simple, fast and composable. Simple tasks should be easy. Performance trade offs should be exposed in the CLI interface. Composition should not come at the expense of performance. Let's say you're playing with some of the data from the Data Science Toolkit, which contains several CSV files. Maybe you're interested in the population counts of each city in the world. So grab the data and start examining it. The next thing you might want to do is get an overview of the kind of data that appears in each column. The stats command will do this for you. The xsv table command takes any CSV data and formats it into aligned columns using elastic tabstops. These commands are instantaneous because they run in time and memory proportional to the size of the slice (which means they will scale to arbitrarily large CSV data). -
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An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
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linSmith
Smith chart intended for educational use
A Smith charting program. You can enter either discrete components or transmission lines, see the results on screen and/or generate Postscript output. Component values can be changed numerically or using scrollbars. -
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Geomview
an interactive 3D viewing program
Geomview is an interactive 3D viewing program for Unix. Geomview lets you view and manipulate three- and higher-dimensional objects, and can also be used as a display engine by other programs to animate objects. Geomview supports OpenGL and uses a Motif X interface. -
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OpenGL Mathematics (GLM) is a C++ mathematics library for 3D software based on the OpenGL Shading Language (GLSL) specification.
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Toolbox for handling X-ray transmission image data collected using the Xradia TXM system. We are constantly updating the code to implement other file formats as well - suggestions are welcome. Main articles: -) TXM-Wizard: a program for advanced data collection and evaluation in full-field transmission X-ray microscopy, Journal of Synchrotron Radiation, 19, 281-287. (2012) http://scripts.iucr.org/cgi-bin/paper_yard?hf5192 -) 3D elemental sensitive imaging using transmission X-ray microscopy, Analytical and Bioanalytical Chemistry, Volume 404, Issue 5, pp 1297-1301 (2012) http://link.springer.com/article/10.1007%2Fs00216-012-5818-9 -) Three-dimensional imaging of chemical phase transformations at the nanoscale with full-field transmission X-ray microscopy, Journal of Synchrotron Radiation, 18, 773-781. (2011) http://scripts.iucr.org/cgi-bin/paper?ie5055
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Eulumdat_3D - QLumEdit2
show and edit eulumdat files
Eulumdat_3D the better Eulumdat viewer and editor. You can view ldt files as 3D ,compare two luminaires, print a simple datasheet. From given light distribution you can create different ldt files depending on light flux and CCT also as app under https://play.google.com/store/apps/details?id=com.riloc.eulumdat -
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This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
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Fudaa
https://gitlab.com/fudaa
Official site: https://fudaa-project.atlassian.net/wiki/spaces/FUDAA/overview Sources moved to GitLab: https://gitlab.com/fudaa -
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LAMINA (Leaf shApe deterMINAtion) is a tool to provide classical measures of leaf shape (blade dimensions) and size (area) as well as measures that indicate asymmetry in leaf shape and measures of herbivory damage (missing leaf area).
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xEsoView is a file viewer for Energy+ .eso output files. xEsoView uses the Qwt extension of the Qt toolkit from Trolltech Inc.
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A 3D engine written in Java aimed at students of computer science. This engine makes it very easy to visualize objects and create 3D applications.
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fsv, the 3D File System Visualizer, allows you to view a collection of directories and files as three-dimensional geometry. It represents all or part of a filesystem as a collection of blocks of varying sizes, each labeled with a filename, and arranged in
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Teem
Tools to process and visualize scientific data and images
Teem is a set of C libraries for manipulation, measurement, and visualization of structured scientific data. Includes N-dimensional image I/O and processing, volume rendering, diffusion tensor processing, and more. Latest code via git clone http://git.code.sf.net/p/teem/teem.git . Join us at https://discord.gg/xBBqZGXkF7 -
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The PDL module gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data sets that are the bread and butter of scientific computing.