Open Source Linux Data Management Systems - Page 29

Infomap is a Java component for displaying and manipulating nodal data. It gives the user the ability to visualize large graph or tree structures by means of expanding and collapsing portions of the structure and by easily zooming in and out.

A Java utility that uses the Informatica Operations API allowing parameter inputs, trapping of suspended workflows and ability to send an email on failure. This utility extends the functionality of the pmcmd startworkflow and starttask command. If you pass in a parameter file and individual parameters on the command line, a temporary parameter file is created that has the values from the parameter file and appends the individual parameters. The e-mail sent is in HTML format using tables and looks similar to the workflow monitor output.

This project hosts the 'Simulation Tool', an extensible, interactive environment for carrying out simulation experiments of SBML models. This project can use RoadRunner or SBW enabled simulators to carry out simulations.

JSynoptic renders information graphically. It can be used as a simple graph plotter, or as a complex run-time monitoring environment. The user sets up shapes (like plots) on graphical pages, and uses data sources (ex: ASCII file) to render information.

KSciPlot is a function plotter for the KDE environment. It supports embedding in KOffice applications, deriving functions, polar plots, etc.

Krona allows hierarchical data to be explored with zoomable HTML5 pie charts. Krona charts can be created using an Excel template or Krona Tools, which includes support for several bioinformatics tools and raw data formats.

Experimental Lindenmayer System generator, in 3D using OpenGL. Used for modeling the fractal growth processes of plants.

Ladder is a hierarchical data management system or an Object Oriented Database Management System (OODBMS). This demo server demonstrates the power of Ladder, a prototype built on mySQL v5.00. This implementation minimizes development costs for the full database engine while allowing developers to test of the concept.

LineColorPaint - Xlib 2D drawing engine. CAD.

The Macro Agent Transport Event-based Simulator (MATES) is intended to efficiently investigate the behavior of distributed agent based systems over mobile ad hoc networks (MANETs). MATES provides an expandable environment for agent-based system testing.

MBDyn_sim_suite is a collection of free pre&post-processing tools and simulation models for the open-source multi-body analysis software MBDyn forming a general purpose simulation environment for structural dynamics with an emphasis on wind turbines.

MCNPydE is a Python library for extracting data from MCNP output file. It requires Python, Matplotlib and Numpy. It is a data reduction tool for MCNP output for ease of results analysis and viewing.

MSCViewer is a tool intended for debugging of control flows in concurrent, distributed systems. The tool loads logs generated by various entities in the system and visualize a sequence diagram chart for events and interactions. The diagram is fully interactive: entity can be added/removed from the diagram and shuffled; events can be filtered, searched, highlighted and annotated with comments. MSCViewer features integration with a Python interpreter which allows writing Python scripts interacting with the model. This powerful feature can be used to automate validatation of distributed control flows, integrate with graphing infrastructure, etc.

Marid is a cross-platform data acquisition and visualization software intended to build complex and hierarchical data acquisition systems. The base concepts of its architecture include: * Graphical deploy configuration builders * Powerful Groovy scripting language * Embedded database ( H2 , HSQLDB) to store data * Cross-platform design (write once, run anywhere) * Embedded GUI-configurable binary/ascii device protocol parser/generator * Deploy manager to deploy firmwares to remote controllers/servers via secure channel * Embedded web-sever * Dynamically linked plugins available from Nexus Repository * Remote monitoring tools * Modular Marid IDE to manage them all

A set of Matlab functions which compute effect size statistics and (exact) confidence intervals for a wide range of data analysis situations, including two-sample-, oneway-, twoway- and contrast analyses as well as categorical data in tables.

Mido is a GUI for MultiPlatform Digital Oscilloscope with a generic multimeter and a spectrum analyzer. Mido can work in demo mode or using variuos extern analogic-digital converter connected in the parallel port. Kernel drivers are included

MiningMart is a graphical tool for transforming data from relational databases. It provides two dual graphical views on the transformations, a data view and a process view. The focus is on the preparation of data for data mining.

1. Added the ability to directly work with the chip (parameter "settings.ini" - Direct=1). 2. The possibility of cyclic writing/recording from realtime to a file and subsequent playback from it is added (double click of the left mouse button anywhere in the top spectrogram). The size of the MB file is specified in the settings file (Cyclic file size=100).

SpecTcl is a Tcl/Tk based histogrammer suitable for analysis of nuclear physics data. SpecTcl is relatively easy to learn, and is based on top of a very open C++ histogramming class framework. SpecTcl has been developed under NSF grant PHY-9528844 and DOE grant DE-SC0000661 Note that as of July 2023, all future development and release packages will be occur at https://github.com/FRIBDAQ/SpecTcl

For big OME data analysis, we integrate commonly used quantitative methods, describe our novel strategies to quantify and analyze biological markers related to the cell or organelle spatial-coordinate model, and present open-source OME-3-Dimensional Reconstruction (OME-3DR), a flexible, programmable and batch-oriented tool based on OME data, for reconstructing 3-dimensional (3D) spatial conformations and conducting further analyses, such as the identification, counting, localization and tracking of bio-imaging markers, calculation of model-contour parameters for association analyses, establishing spatial-coordinate system, 3D co-localization analyses and so on. OME-3DR is well modularized (for automation, three main menus integrate hundreds of sub-functions), easy to use and ingenious; indeed, after setting the corresponding parameters, batch processing is relatively straightforward when beginning the 3D model reconstruction...

Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.

OWLViz4U (OWLViz for Unicode) is an extension of OWLViz for supporting Unicode based ontologies, which is an OWL visuliazation tool used with the Protege OWL plugin. OWLViz4U is part of the W3China Open Source Project (http://www.w3china.org).

Our goal is to create the world's fastest extendable, non-transactional time series database for big data (you know, for kids)! Log file indexing is our initial focus. For example append only ASCII files produced by libraries like Log4J, or containing FIX messages or JSON objects. Occursions was built by a small team sick of creating hacks to remotely copy and/or grep through tons of large log files. We use it to index around a terabyte of new log data per day. You can use it too. Who doesn't have `just too many' log files? Occursions asynchronously tails log files and indexes the individual lines in each log file as each line is written to disk so you don't even have to wait for a second after an event happens to search for it. Occursions uses custom disk backed data structures to create and search its indexes so it is very efficient at using CPU, memory and disk. You can extend Occursions with shared libraries to support your own file formats, even binary file formats!

Ogles strives to provide an open source data model for neuroscientific data visualization and analytics. Ogles started out as a planning system for frame based stereotactic neurosurgery. Ogles(1) is discontinued. Release candidate (RC) is Ogles2b. Ogles is accompanied by a simple DICOM reader and NIfTI converting tool (Sdr2).

Google Web Toolkit-based tool for publishing user-friendly OLAP views, reports and dashboards. Uses Mondrian OLAP and a relational database as the back-end.