Open Source Ecosystem Sciences Software
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Ecosystem Sciences Software
View 159 business solutionsBrowse free open source Ecosystem Sciences software and projects below. Use the toggles on the left to filter open source Ecosystem Sciences software by OS, license, language, programming language, and project status.
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ToxTrac
Free Animal Tracking Software
ToxTrac is a free Windows program optimized for tracking animals. It uses an advanced tracking algorithm and includes Preprocessing, Background subtraction, Thresholding, Post-processing, and Filters. It is robust; very fast; and can handle one or several animals in one or several environments. The program provides useful statistics as output. ToxTrac can be used for fish, insects, rodents, etc. If used, please cite: Rodriguez, A., Zhang, H., Klaminder, J., Brodin, T., Andersson, P. L. and Andersson, M. (2018). ToxTrac: a fast and robust software for tracking organisms. Methods in Ecology and Evolution. 9(3):460–464 Rodriguez, A., Zhang, H., Klaminder, J., Brodin, T., and Andersson, M. (2017). ToxId: an algorithm to track the identity of multiple animals. Scientific Reports. 7(1):14774. Contact and Support: Alvaro Rodriguez (Main Developer), a.tajes@udc.es Magnus Andersson, magnus.andersson@umu.se -
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openLCA
professional open source software for LCA
Software for sustainability assessment, highly modular; initially focused on Life Cycle Assessments. -
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An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. Requires Java 8.
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Niche Analyst (NicheA) was developed based on the BAM framework which allows users to create virtual spaces and virtual species, and to analyze ecological niches in both multivariate environmental and geographic spaces, linking views of the niche in the two spaces. The unique functionality in NicheA, not available in other software programs, is estimating Grinnellian niches of species based on environmental variables and occurrence records, but with a clear focus on fundamental ecological niches. NicheA can display ecological niches; calculate their shape, density, location, and other attributes; and quantify similarity among multiple niches.
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The application Bio7 is an integrated development environment for ecological modelling and contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.
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Biosphere3D
Interactive landscape rendering based on a virtual globe.
Biosphere3D targets interactive landscape rendering based on a virtual globe. It supports DEM, satellite and aerial images, 3D models (Collada), 3D plant models, and Shapefiles. Biosphere3D was initially developed by the landscape visualization group of the Zuse Institute Berlin by Malte Clasen and is now developed further by Lenné3D GmbH. For more information about the used concepts have a look at the thesis of Malte Clasen: Towards Interactive Landscape Visualization Doctoral Thesis published 2011 via Technische Universität Berlin https://doi.org/10.14279/depositonce-3005 -
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SeaBreeze
Open-source cross-platform spectrometer device driver
SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP/7/8), MacOSX, and Linux (x86/x64/ARM). -
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Biogenesis Color Mod
Mod for evolution simulation and artificial life program Biogenesis
You can download the Color Mod at the Biogenesis main site too (included in the main download now). You also find the sourcecode there. If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation. Original project by Joan Queralt Molina: https://sourceforge.net/projects/biogenesis/ Includes Tyler Colemans "Features Mod": https://sourceforge.net/projects/biogenesisfeatu/ Biogenesis discussion forum: https://sourceforge.net/p/biogenesis/discussion/ Biogenesis runs faster (at least for myself) if you open a Google Chrome window (don´t know why :D) -
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Cultivation is a game about the interactions within a gardening community. The resources needed for genetic propagation are tight, and relations can become tense. Cultivation explores self-interest, the common good, conflict, and compromise.
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Virtual Laboratory Environment
A multi-modeling and simulation environment to study complex systems
VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical mathematical formalism: Ordinary Differential Equation with Euler, Range-Kutta or QSS integrator, Finite state automaton (FDDEVS, UML State chart, Hybrid Petri net). The VLE environment provides an IDE to develop C++ models, DEVS coupled models. VLE have also three ports to use the VFL with Python, Java and R programming languages. -
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PAMGUARD
Detection Classification and Localisation of marine mammals
The PAMGUARD project develops software to help detect, locate and classify marine mammals using Passive Acoustic Monitoring. This project is being migrated to github at https://github.com/PAMGuard. Please go there for the latest updates. thank you sourceforge for hosting us for all these years. -
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A library of R packages for use in fisheries modelling, including the evaluation of management strategies and stock assessment.
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EcoMod is an OpenGL application for 3D modelling, simulation and visualization of ecosystems. Trees are modelled and used within simulation to render the emerging natural phenomena of spontaneous afforestation process. Multidisciplinary.
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iTag
Tag images using various categories and modifiers
iTag has been designed for researchers that rely on photographic census techniques of animals that are hard to detect via image recognition algorithms and was originally developed for counting Grey Seals in the German wadden sea during March 2013. It has since then been further expanded and has now reached beta status. iTag allows Users to define up to 9 different categories and name them accordingly. In addition, 4 modifiers are available to further increase the options during a tagging session. Users are able to load a series of Images into a session and add tags on objects on these images within previously defined categories and modifiers. Upon ending the session, result files are produced including (if provided by the EXIF data) the gps information for each Picture, the number of objects in each category and a detailed result file that describes each individual object. In addition, all images that were tagged are saved. -
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BEAST
BEAST is a tool dedicated to assess political goals of woody bioenergy
The BioEnergy Allocation and Simulation Tool (BEAST) is a tool dedicated to assess political goals of woody bioenergy production in the context of available biomass potentials and corresponding economic and ecological criteria on a regional level. It is a useful tool in participative decision making processes by iterative simulation and visualization of complex issues. BEAST is a data- and model-driven Decision Support System (DSS) evaluating woody biomass potentials from forests, hedges and trees outside forests as well as short rotation coppice (SRC). The latter one is modelled spatially explicit. This opens the possibility to identify prefered areas for SRC production under different restrictions and goals. Forest wood and wood from outside forests are treated only aggregated. -
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The software takes the initial gene correlations obtained as initial data, or from a Genepop file, and simulates the transgenerational transition of both the gene correlations and the fixation indices (Fls, Fil y Fis) for any number of generations.
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GSMeteo provides an interface to LaCrosse weather stations through a GSM phone. Users simply call the phone attached to the system and wait for the answer: a voice synthetized with Festival speech libraries will read realtime data coming from the weather
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Woodland Potential Calculator
Woodland potential calculator GIS presentation application
The Forestry Commission and Natural England commissioned a bespoke data collection and presentation tool for calculating the potential for increasing the extent of tree cover across the north west of England. The data was divided into sub-regions by landscape type using Natural England's Character Area classifications. The potential within each of these Character Areas was then estimated by working groups of local experts who were capable of making reasoned assessments of both the opportunities and constraints to woodland creation. Subsequently, this project was considerably extended and adopted as a national system. It is currently being used to compile the National Woodland Potential dataset for the whole of England. -
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A User Interface implementation of a "CO2/Carbon Calculator" and profiling application to help accelerate action on Climate Change. This client interface is an example of front-end access to the AMEE API. It provides examples of registration, calculati
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ArcGIS-NRA-Tool
National Responsibility Assessment for Endangered Species/Habitatats
ArcGIS Tool for the Assessment of National Responsibilities for Endangered Species and Habitats The aim of the source code is to develop a National Responsibility Assessment Tool that can be used as plug-in for ArcGIS . Copyright (c) 2020 Yu-Pin Lin / 林裕彬 Department of Bioenvironmental Systems Engineering National Taiwan University No. 1, Sec. 4, Roosevelt Road Taipei 10617 Taiwan R.O.C. Office Phone: 886-2-33663467; Fax: 886-2-2368-6980 E-mail: yplin@ntu.edu.tw http://homepage.ntu.edu.tw/~yplin/Scales-Taiwan.htm The code can be found here: https://sourceforge.net/p/arcgis-nra-tool/code/ci/main/tree/ References: Lin YP, Schmeller DS, Ding TS, Wang YC, Lien WY, et al. (2020) A GIS-based policy support tool to determine national responsibilities and priorities for biodiversity conservation. PLOS ONE 15(12): e0243135. doi: 10.1371/journal.pone.0243135 -
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BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.
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Customizable Observation Video imagE Record. COVER software has been designed and developed by Ifremer / LEP in complement of existing software for underwater vehicle videos/photos analysis.
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CSESD-Archiving
A weather database system built around Campbell Scientific equipment
Project moved to GitHub: github.com/rejjir/CSESD-archiving -
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This software enable cannabis grower to manage and retrieve statistics about culture, tools included have the goal to help growing indoor cannabis.
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ChesROMS is developing a ROMS model of the Chesapeake Bay to help in the prediction of Harmful Algal Blooms. We hope to catalyze a new method of community modeling with involvement beyond the core researchers of the ChesROMS project.