Open Source Linux Ecosystem Sciences Software - Page 4

KNeTS (Knowledge Elicitation Tools) is a survey tool to create multi-agent models based on local knowledge using pattern analysis to identify rules that are iteratively validated with the informant. The final output is a knowledge-based multi-agent model

The Life Cycle Assessment Spreadsheet allows you to calculate carbon footprints and other environmental impacts for given product systems. Use requires basic skills in LCA and matrix algebra, but rewards effort with professional analytical tools.

Life Science Identifier (LSID) Specification is a globally unique identifying scheme for information resources on the life sciences domain. It is based on Internet standards such as DNS, URN, HTTP, RDF, SOAP, WSDL, and web services.

Please use the MOHID code official site http://mohid.codeplex.com/, Thank you, The MOHID team

MACROMS is a software to model the coastal ocean circulation and fish larvae transport for the USA Mid-Atlantic region, which covers estuaries and continental shelves of NYC, NJ, DE, MD, PA, VA and NC. Rutgers ROMS model is applied for this study.

MBAS -- Macro-Biological Analysis System -- provides a set of interoperable tools for aid in the analysis of biological data. The backing database is currently PostgreSQL and the primary language is C, though some data entry tools are written in Java.

MED-FOES is an implementation of a stochastic Agent-Based Simulation (ABS) system for analyzing demographic changes in a single population of Medfly (Ceratitis capitata) over time. The simulation currently takes population extinction as a given because it aims to give us better estimates of necessary quarantine lengths in areas where Medfly is not currently established but does repeatedly invade. Thus the objective of this software is to estimate the time to local extirpation based on known ranges of developmental, survivorship and reproductive parameters, as well as assumed ranges of an eradication pressure parameter. For a complete analysis and estimate of time to extirpation one would execute a large number of individual simulations evenly distributed over parameter space to estimate the time at which an arbitrary percentage of the simulations show extirpation.

MIMES is a suite of dynamic ecological economic computer models specifically aimed at integrating our understanding of ecosystem functioning, ecosystem services, and human well-being across a range of spatial scales.

MeteoStaionNM is application for weather station WS1080(WH1080, National Geographic: 265 NE) on platform linux Ubuntu (Kubuntu). This application creating TXT file with actual values (for example : direction wind, wind speed, pressure, temperature outdoor and indoor etc...). Next, application creating picture file PNG with picture of widged Application, which is possible upload to WEBPage. The Application is written in C++. For exaple, You can open SOURCE code in Qt Creator (download on a web page NOKIA) and compile for Your OS (Windows, Ubuntu, Kubuntu, Symbian etc...). Application is not tested for Windows!!! Notice: You must set permissions of the USB device in the application USERS AND GROUP on the Ubuntu. User XXX and ROOT is need to be add to ONE group.REBOOT. v1.07 Improvements: New Icons and better algorithms for current weather. New configuration options such as font color and background color panel. Communication with the server is implemented, but only in test mode.

Webapplication to collect, store, display and share information about natural events in proteced areas.

The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs.

The OBO-Annotator is a semantic NLP tool that is designed to give its end-users a great deal of flexibility to combine any number of OBO ontologies from the OBO foundry regardless of their format and use them to annotate text-bases.

Oxygen Model for Microtidal Estuaries and Lagoons-OMMEL. Initially designed to describe O2 dynamics in Alfacs Bay (Ebre Delta, NW Mediterranean, Spain), but usable for any marine coastal ecosystem with small tides. http://tdr.cesca.es/TDX-0222108-113814

The main objective of the ONE project is to enrich Digital Ecosystems with an decentralised negotiation environment and enabling tools that will allow organisations to create contract agreements for supplying integrated services as a virtual organisation

Obs-dm aims to provide a robust and reliable way to collect, analyze, and share observational data. It is being designed for extendability into other areas such as fisheries and habitat science.

OpenAMIS (Open AgroMeteorological Information System) is customable free and open software for websites providing agrometeorological information to farmers and agroindustry.

phpWeatherMap is a set of php scripts to generate weather maps for (almost) every country in the world. You can easily download new maps and integrate them into phpWeatherMap. Map and weather data is available for free on the net.

PIHM is a multiprocess, multi-scale hydrologic model where the major hydrological processes are fully coupled using the semi-discrete finite volume method.

PhaenUhr is an easy to use graphical Java application to visualize the impact of climate change on seasonal biological phenomena as two nested phenological clocks. You can configure the clocks in many ways and export them to standard graphic formats.

Moved to: http://parkermills.github.io/phagetherapy/

Physical modelling of water transport in plants

Plantlore is a botanical occurence database being written in Java. It also has a BIOCASE Provider software based web interface.

PredatorPreySimulation is a graphical Java application for simulating a predator prey ecosystem using the Volterra-Lotka equations.

A collection of modules and enduser tools designed to help design, test and use system models. While my research (hence, the examples) is focused on hydro-ecological systems, the program can be used on any system characterized by ODEs (and soon PDEs?)