Open Source Python Software - Page 35
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Python Software
Browse free open source Python Software and projects below. Use the toggles on the left to filter open source Python Software by OS, license, language, programming language, and project status.
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Alphafold2
Unofficial Pytorch implementation / replication of Alphafold2
To eventually become an unofficial working Pytorch implementation of Alphafold2, the breathtaking attention network that solved CASP14. Will be gradually implemented as more details of the architecture is released. Once this is replicated, I intend to fold all available amino acid sequences out there in-silico and release it as an academic torrent, to further science. Deepmind has open sourced the official code in Jax, along with the weights! This repository will now be geared towards a straight pytorch translation with some improvements on positional encoding. lhatsk has reported training a modified trunk of this repository, using the same setup as trRosetta, with competitive results. The underlying assumption is that the trunk works on the residue level, and then constitutes to atomic level for the structure module, whether it be SE3 Transformers, E(n)-Transformer, or EGNN doing the refinement. -
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Amazon Braket Python SDK
A python SDK for interacting with quantum devices on Amazon Braket
The Amazon Braket Python SDK is an open-source library to design and build quantum circuits, submit them to Amazon Braket devices as quantum tasks, and monitor their execution. Before you begin working with the Amazon Braket SDK, make sure that you've installed or configured the following prerequisites. Download and install Python 3.7.2 or greater from Python.org. As a managed service, Amazon Braket performs operations on your behalf on the AWS hardware that is managed by Amazon Braket. Amazon Braket can perform only operations that the user permits. You can read more about which permissions are necessary in the AWS Documentation. The Braket Python SDK should not require any additional permissions aside from what is required for using Braket. However, if you are using an IAM role with a path in it, you should grant permission for iam:GetRole. -
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Anthropic SDK Python
Provides convenient access to the Anthropic REST API from any Python 3
The anthropic-sdk-python repository is the official Python client library for interacting with the Anthropic (Claude) REST API. It is designed to provide a user-friendly, type-safe, and asynchronous/synchronous capable interface for making chat/completion requests to models like Claude. The library includes definitions for all request and response parameters using Python typed objects, automatically handles serialization and deserialization, and wraps HTTP logic (timeouts, retries, error mapping) so that developers can call the API in a clean, high-level way. The SDK supports both synchronous and asynchronous usage (via async/await) depending on context. Importantly, it also supports streaming responses via Server-Sent Events (SSE) so that large outputs can be consumed incrementally rather than waiting for the full response. The client offers helper abstractions for tools (function-style “tools”) and streaming utilities for building interactive agents. -
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Axolotl
Go ahead and axolotl questions
Axolotl is a powerful and flexible framework for fine-tuning large language models on custom datasets. Built for researchers and developers, Axolotl simplifies the process of adapting LLMs for specific tasks, including chat, code generation, and instruction following. It supports a wide variety of model architectures and offers out-of-the-box optimization strategies for efficient training. -
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BERTopic
Leveraging BERT and c-TF-IDF to create easily interpretable topics
BERTopic is a topic modeling technique that leverages transformers and c-TF-IDF to create dense clusters allowing for easily interpretable topics whilst keeping important words in the topic descriptions. BERTopic supports guided, supervised, semi-supervised, manual, long-document, hierarchical, class-based, dynamic, and online topic modeling. It even supports visualizations similar to LDAvis! Corresponding medium posts can be found here, here and here. For a more detailed overview, you can read the paper or see a brief overview. After having trained our BERTopic model, we can iteratively go through hundreds of topics to get a good understanding of the topics that were extracted. However, that takes quite some time and lacks a global representation. Instead, we can visualize the topics that were generated in a way very similar to LDAvis. By default, the main steps for topic modeling with BERTopic are sentence-transformers, UMAP, HDBSCAN, and c-TF-IDF run in sequence. -
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BackgroundRemover
Background Remover lets you Remove Background from images and video
BackgroundRemover is a command line tool to remove background from image and video, made by nadermx to power BackgroundRemoverAI. If you wonder why it was made read this short blog post. -
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Barman
Backup and Recovery Manager for PostgreSQL
Barman (Backup and Recovery Manager) is an enterprise-grade tool for managing backups and disaster recovery of PostgreSQL databases. It supports both full and incremental backups, Point-In-Time Recovery (PITR), and remote backup via SSH. Barman is widely used by DBAs to ensure secure, reliable, and consistent backups in production environments. -
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Bayesian Optimization
Python implementation of global optimization with gaussian processes
This is a constrained global optimization package built upon bayesian inference and gaussian process, that attempts to find the maximum value of an unknown function in as few iterations as possible. This technique is particularly suited for optimization of high cost functions, situations where the balance between exploration and exploitation is important. More detailed information, other advanced features, and tips on usage/implementation can be found in the examples folder. Follow the basic tour notebook to learn how to use the package's most important features. Take a look at the advanced tour notebook to learn how to make the package more flexible, how to deal with categorical parameters, how to use observers, and more. Explore the options exemplifying the balance between exploration and exploitation and how to control it. Explore the domain reduction notebook to learn more about how search can be sped up by dynamically changing parameters' bounds. -
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Binary Ninja MCP
A Binary Ninja plugin, MCP server
The Binary Ninja MCP is a plugin and bridge that integrates Binary Ninja with Large Language Model clients via the Model Context Protocol, enhancing reverse engineering workflows with AI assistance. -
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Bitcart
Bitcart is a platform for merchants, users and developers
An open-source platform for managing cryptocurrency payments and stores without intermediaries. -
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BleachBit
BleachBit system cleaner for Windows and Linux
When your computer is getting full, BleachBit quickly frees disk space. When your information is only your business, BleachBit guards your privacy. With BleachBit you can free cache, delete cookies, clear Internet history, shred temporary files, delete logs, and discard junk you didn't know was there. Designed for Linux and Windows systems, it wipes clean thousands of applications including Firefox, Adobe Flash, Google Chrome, Opera, and more. Beyond simply deleting files, BleachBit includes advanced features such as shredding files to prevent recovery, wiping free disk space to hide traces of files deleted by other applications, and vacuuming Firefox to make it faster. Better than free, BleachBit is open source. -
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Bolna
Conversational voice AI agents
Bolna is an end-to-end open-source platform for building conversational voice AI agents, enabling developers to create voice-first conversational assistants efficiently. -
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COCO Annotator
Web-based image segmentation tool for object detection & localization
COCO Annotator is a web-based image annotation tool designed for versatility and efficiently label images to create training data for image localization and object detection. It provides many distinct features including the ability to label an image segment (or part of a segment), track object instances, label objects with disconnected visible parts, and efficiently store and export annotations in the well-known COCO format. The annotation process is delivered through an intuitive and customizable interface and provides many tools for creating accurate datasets. Several annotation tools are currently available, with most applications as a desktop installation. Once installed, users can manually define regions in an image and creating a textual description. Generally, objects can be marked by a bounding box, either directly, through a masking tool, or by marking points to define the containing area. COCO Annotator allows users to annotate images using free-form curves. -
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Catalyst
Accelerated deep learning R&D
Catalyst is a PyTorch framework for accelerated Deep Learning research and development. It allows you to write compact but full-featured Deep Learning pipelines with just a few lines of code. With Catalyst you get a full set of features including a training loop with metrics, model checkpointing and more, all without the boilerplate. Catalyst is focused on reproducibility, rapid experimentation, and codebase reuse so you can break the cycle of writing another regular train loop and make something totally new. Catalyst is compatible with Python 3.6+. PyTorch 1.1+, and has been tested on Ubuntu 16.04/18.04/20.04, macOS 10.15, Windows 10 and Windows Subsystem for Linux. It's part of the PyTorch Ecosystem, as well as the Catalyst Ecosystem which includes Alchemy (experiments logging & visualization) and Reaction (convenient deep learning models serving). -
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Chemprop
Message Passing Neural Networks for Molecule Property Prediction
Chemprop is a repository containing message-passing neural networks for molecular property prediction. -
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Ciphey
Decrypt encryptions without knowing the key or cipher
Fully automated decryption/decoding/cracking tool using natural language processing & artificial intelligence, along with some common sense. You don't know, you just know it's possibly encrypted. Ciphey will figure it out for you. Ciphey can solve most things in 3 seconds or less. Ciphey aims to be a tool to automate a lot of decryptions & decodings such as multiple base encodings, classical ciphers, hashes or more advanced cryptography. If you don't know much about cryptography, or you want to quickly check the ciphertext before working on it yourself, Ciphey is for you. The technical part. Ciphey uses a custom-built artificial intelligence module (AuSearch) with a Cipher Detection Interface to approximate what something is encrypted with. And then a custom-built, customizable natural language processing Language Checker Interface, which can detect when the given text becomes plaintext. -
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Claude Code SDK Python
Python SDK for Claude Agent
claude-code-sdk-python is the Python SDK for Claude Code, Anthropic’s agentic coding system. It provides abstractions to easily query Claude Code (with streaming support) and conduct interactive sessions. The SDK includes core client classes, asynchronous query functions, and support for custom tools and hooks within Claude sessions. It is designed to integrate with local Python workflows and allow developers to embed Claude Code capabilities directly in their applications or scripts. The repo is MIT-licensed and includes documentation and installation instructions (requires Python 3.10+, Node installation of Claude Code). Example usage shows how to stream responses, parse structured message blocks, or create persistent client sessions. -
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ClearML
Streamline your ML workflow
ClearML is an open source platform that automates and simplifies developing and managing machine learning solutions for thousands of data science teams all over the world. It is designed as an end-to-end MLOps suite allowing you to focus on developing your ML code & automation, while ClearML ensures your work is reproducible and scalable. The ClearML Python Package for integrating ClearML into your existing scripts by adding just two lines of code, and optionally extending your experiments and other workflows with ClearML powerful and versatile set of classes and methods. The ClearML Server storing experiment, model, and workflow data, and supports the Web UI experiment manager, and ML-Ops automation for reproducibility and tuning. It is available as a hosted service and open source for you to deploy your own ClearML Server. The ClearML Agent for ML-Ops orchestration, experiment and workflow reproducibility, and scalability. -
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CodeChecker
CodeChecker is an analyzer tooling, defect database
CodeChecker is a static analysis infrastructure built on the LLVM/Clang Static Analyzer toolchain, replacing scan-build in a Linux or macOS (OS X) development environment. Executes Clang-Tidy and Clang Static Analyzer with Cross-Translation Unit analysis, Statistical Analysis (when checkers are available). Creates the JSON compilation database by wiretapping any build process (e.g., CodeChecker log -b "make"). Automatically analyzes GCC cross-compiled projects: detecting GCC or Clang compiler configuration and forming the corresponding clang analyzer invocations. Incremental analysis: Only the changed files and its dependencies need to be reanalyzed. False positive suppression with a possibility to add review comments. Result visualization in command line or in static HTML. Web application for viewing discovered code defects with a streamlined, easy experience (with PostgreSQL, or SQLite backend). -
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Convolution arithmetic
A technical report on convolution arithmetic in deep learning
A technical report on convolution arithmetic in the context of deep learning. The code and the images of this tutorial are free to use as regulated by the licence and subject to proper attribution. The animations will be output to the gif directory. Individual animation steps will be output in PDF format to the pdf directory and in PNG format to the png directory. We introduce a guide to help deep learning practitioners understand and manipulate convolutional neural network architectures. The guide clarifies the relationship between various properties (input shape, kernel shape, zero padding, strides and output shape) of convolutional, pooling and transposed convolutional layers, as well as the relationship between convolutional and transposed convolutional layers. Relationships are derived for various cases, and are illustrated in order to make them intuitive. -
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Dash
Build beautiful web-based analytic apps, no JavaScript required
Dash is a Python framework for building beautiful analytical web applications without any JavaScript. Built on top of Plotly.js, React and Flask, Dash easily achieves what an entire team of designers and engineers normally would. It ties modern UI controls and displays such as dropdown menus, sliders and graphs directly to your analytical Python code, and creates exceptional, interactive analytics apps. Dash apps are very lightweight, requiring only a limited number of lines of Python or R code; and every aesthetic element can be customized and rendered in the web. It’s also not just for dashboards. You have full control over the look and feel of your apps, so you can style them to look any way you want. -
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Dask
Parallel computing with task scheduling
Dask is a Python library for parallel and distributed computing, designed to scale analytics workloads from single machines to large clusters. It integrates with familiar tools like NumPy, Pandas, and scikit-learn while enabling execution across cores or nodes with minimal code changes. Dask excels at handling large datasets that don’t fit into memory and is widely used in data science, machine learning, and big data pipelines. -
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DataChain
AI-data warehouse to enrich, transform and analyze unstructured data
Datachain enables multimodal API calls and local AI inferences to run in parallel over many samples as chained operations. The resulting datasets can be saved, versioned, and sent directly to PyTorch and TensorFlow for training. Datachain can persist features of Python objects returned by AI models, and enables vectorized analytical operations over them. The typical use cases are data curation, LLM analytics and validation, image segmentation, pose detection, and GenAI alignment. Datachain is especially helpful if batch operations can be optimized – for instance, when synchronous API calls can be parallelized or where an LLM API offers batch processing. -
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DeepSparse
Sparsity-aware deep learning inference runtime for CPUs
A sparsity-aware enterprise inferencing system for AI models on CPUs. Maximize your CPU infrastructure with DeepSparse to run performant computer vision (CV), natural language processing (NLP), and large language models (LLMs). -
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DeepSpeed
Deep learning optimization library: makes distributed training easy
DeepSpeed is an easy-to-use deep learning optimization software suite that enables unprecedented scale and speed for Deep Learning Training and Inference. With DeepSpeed you can: 1. Train/Inference dense or sparse models with billions or trillions of parameters 2. Achieve excellent system throughput and efficiently scale to thousands of GPUs 3. Train/Inference on resource constrained GPU systems 4. Achieve unprecedented low latency and high throughput for inference 5. Achieve extreme compression for an unparalleled inference latency and model size reduction with low costs DeepSpeed offers a confluence of system innovations, that has made large scale DL training effective, and efficient, greatly improved ease of use, and redefined the DL training landscape in terms of scale that is possible. These innovations such as ZeRO, 3D-Parallelism, DeepSpeed-MoE, ZeRO-Infinity, etc. fall under the training pillar.
