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1

PANDA

A comprehensive and flexible quantification tool for proteomics data

PANDA is a comprehensive and flexib tool for quantitative proteomics data analysis, which is developed based on our solid foundations in quantitative proteomics for years. Several novelties have been implemented in it. First, we implement the advantage algorithms of LFQuant (Proteomics 2012, 12, (23-24), 3475-84) and SILVER (Bioinformatics 2014, 30, (4), 586-7) into PANDA. Second, we consider the state-of-art concept of quantification reliability in this quantitative workflow. On the levels...

Downloads: 8 This Week

Last Update: 2024-06-07
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2

gogadget

A toolbox for interpretation and visualization of RNA-seq GO analysis

...To install the package download the "gogadget_2.1.tar.gz" file, open R and install with the following line: install.packages( "C:/your/directory/gogadget_2.1.tar.gz", repos = NULL, type="source") The package was made in R 3.4.2 on a Windows 7 computer, and is also tested on Ubuntu. Please cite the following paper if you publish results obtained using gogadget: Nota, B. (2017), Gogadget: an R Package for Interpretation and Visualization of GO Enrichment Results. Mol. Inf. May;36(5-6). doi: 10.1002/minf.201600132.

Downloads: 0 This Week

Last Update: 2017-10-26
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3

SimAssem

For processing and/or simulating species assemblage data.

SimAssem is a tool for investigating the performances of species richness estimators across widely ranging assemblages and survey designs. Assemblages are simulated by specifying the: 1) number of species, 2) total abundance of individuals, 3) abundance distribution, 4) spatial configuration, 5) species detection probabilities, 6) survey design, and 7) number of grid cells to survey (out of a square grid comprised of 10,000 cells). SimAssem also processes existing encounter data and formats...

Downloads: 0 This Week

Last Update: 2014-04-04
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4

SIPES

SIPES (Security Incident Pollicy Enforcement System) aims to provide an automated e-mail,XML and PKI based system for automated security policy enforcement based on statefull risk assesment and open exchange formats.

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Downloads: 0 This Week

Last Update: 2013-03-21
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